Pseudomonas germanica: J0G10_29840
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Entry
J0G10_29840 CDS
T08191
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pgf
Pseudomonas germanica
Pathway
pgf00300
Lysine biosynthesis
pgf00470
D-Amino acid metabolism
pgf01100
Metabolic pathways
pgf01110
Biosynthesis of secondary metabolites
pgf01120
Microbial metabolism in diverse environments
pgf01230
Biosynthesis of amino acids
Module
pgf_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pgf00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
J0G10_29840 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
J0G10_29840 (dapF)
Enzymes [BR:
pgf01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
J0G10_29840 (dapF)
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Ortholog
Paralog
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
QYY81858
UniProt:
A0ABX8YPY3
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All DBs
Position
6694884..6695714
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AA seq
276 aa
AA seq
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MLLRFTKMHGLGNDFMVLDLVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPSNPDVDF
RYRIFNSDGSEVEQCGNGARCFARFVLDKRLTAKRQIRVETKGGIIELDVRNDGQIGVNM
GAPRLVPADIPFEAPAQATSYQLEVDGTTVELAAVSMGNPHAVLRVQDINSAPVHELGPK
IEHHPRFPARVNVGFLQVIDRNRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPL
LIDLPGGRLSIEWAGPGQPVLMTGPAVRVYEGQVRL
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgcgttttactaaaatgcacggcttgggcaatgacttcatggttctcgacctg
gtcagccagcacgcgcatattcagccaaagcacgccaagcagtggggcgaccgccacacc
ggcatcggtttcgaccagttgctgatcgttgaggctccgagcaatccggacgtggatttc
cgttaccggatcttcaattccgatggctcggaagtcgagcagtgcggcaacggtgcgcgc
tgctttgcacgcttcgtgctcgacaagcgtctgaccgccaaacggcagattcgcgtcgag
accaagggcggcatcatcgaactggacgtgcgtaacgacggccagatcggcgtgaacatg
ggcgccccgcgtctggtgccagcggacattccgttcgaagcgccagcgcaagcgaccagc
tatcagctggaagtcgacggcaccacggtcgaactggccgccgtgtcgatgggcaacccg
cacgccgtgttgcgcgtgcaggacatcaacagtgcaccggtgcatgagctggggccgaaa
atcgaacaccatccgcgcttccccgcgcgagtgaatgtcggttttctccaggtcatcgac
cgtaaccgtgcgcagttgcgcgtgtgggaacgcggtgccggggaaacccaagcctgcggt
accggcgcctgtgcagcggctgtcgctgcgatcagccaggggtggatggattcgccgcta
ttgatcgacctgcccggcgggcgcctgtccattgaatgggcaggccctggccaaccggtg
ctgatgaccggtccggcagtgcgtgtatacgaaggacaagtacgtctttga
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