Pseudomonas graminis: FX982_00080
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Entry
FX982_00080 CDS
T06934
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pgg
Pseudomonas graminis
Pathway
pgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FX982_00080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgg03019
]
FX982_00080
03009 Ribosome biogenesis [BR:
pgg03009
]
FX982_00080
Enzymes [BR:
pgg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FX982_00080
Messenger RNA biogenesis [BR:
pgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FX982_00080
Ribosome biogenesis [BR:
pgg03009
]
Prokaryotic type
rRNA helicases
FX982_00080
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QKF49162
UniProt:
A0A6M8MGN5
LinkDB
All DBs
Position
complement(79147..80823)
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AA seq
558 aa
AA seq
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MTQETGGFAALNLHPTIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILSLIDPTKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPEAYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERMTGQKIAEVRLPDSQAVLDARIKKLTNSLSPLVADAEASHGELLDRLTADIGCTPRAL
AAALLRKATNGQALTLSAIEKERPLVPNNAPRGDRPERPAGDRPDRGDRERRAPVPLAEG
RARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLAKL
KDTRVAGKQLKLRRYRED
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgctcttaaccttcacccgacaattgttgcagct
gtagtagccaccggctacgaagagccttcggccattcagcagcaatcgatccccattatt
ctcgccggtcacgacatgatcggtcaggcgcagacaggtaccggtaaaaccgccgccttc
gctctgcccatcctgagcctgatcgacccgacgaaacgcgagccgcaagcgctgatcctc
gcgccgactcgtgagctggccctgcaagtggccaccgcgttcgaaacctacgccaagcag
atgccaggcgttaccgttgtggctgtctacggcggcgcgccaatgggcccgcagctgaaa
gccattcgcaatggcgctcaaatcgtcgtcgctaccccgggccgtctttgtgaccacctg
cgtcgtgacgaaaaagtcctggcgactgtgaaccatctggttctcgatgaagctgacgaa
atgctcaagctgggcttcatggatgacctcgaagtcatcttcaaggccatgcctgaaacc
cgtcagaccgtgctgttctcggcgaccctgccgcagtcgatccgcgcgatcgccgagcgt
cacctgaaagacccgaaacacgtcaagatccagagcaagacccagaccgttaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaagacctctgccgtgctgagcctgctg
gaagtcgaagatttcgacgccctgatcatgttcgtgcgcaccaagcaggccactctggat
ctggccagtgcccttgaagccaaaggctacaaggctgctgcgctgaacggcgacatcgct
cagaaccagcgtgaacgcgtcatcgactccctcaaggatggccgtctggacatcgttgtt
gcgactgacgttgctgcccgtggtcttgacgttccgcgtatcactcacgtgttcaacgtt
gacatgccgtacgacccggaagcctacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggtcgcgccctgttgctggtaacgccgcgtgagcgtcgcatgctgcaagttatc
gagcgcatgaccggtcagaaaatcgccgaagtccgcctgccggactcccaggccgttctc
gatgcccgcatcaagaaactgaccaacagcctgtcgccgctggtcgctgatgctgaagca
agccatggcgaattgctggaccgcctgactgccgacatcggttgcaccccgcgtgctctg
gccgctgccctgctgcgcaaggccaccaatggtcaggcgctgaccctgagtgcgatcgag
aaagagcgtccactggtgccgaacaacgcgccacgtggtgaccgtcctgagcgtccggca
ggcgaccgtcctgatcgtggcgaccgtgaacgtcgtgccccggtgccgttggccgaaggc
cgtgctcgctgccgtaccgcgctgggtgcccgtgacggcatcgctgcgaaaaacctgctg
ggcgccatcctcaatgaaggtggtctggctcgcgaagcaatcggtcgcatccaggtgcgt
gacagcttcagcctcgtcgagctgccggaagacggtctcgagcgcctgctggccaagctg
aaagacacccgcgttgccggcaagcagctgaagctgcgtcgctatcgcgaagactga
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