Pseudomonas graminis: FX982_00680
Help
Entry
FX982_00680 CDS
T06934
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pgg
Pseudomonas graminis
Pathway
pgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FX982_00680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgg03019
]
FX982_00680
Enzymes [BR:
pgg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FX982_00680
Messenger RNA biogenesis [BR:
pgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FX982_00680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
QKF49760
UniProt:
A0A6M8MF28
LinkDB
All DBs
Position
732232..733704
Genome browser
AA seq
490 aa
AA seq
DB search
MTVLKALKKMFGKSEAEPLAPAAPLPVPQRQTESVSREPSAAEVHVPMPEHSAAIAPPVT
SPTRAERPRRERAPKPVVIPWKPEDFVVEPQEGKTRFHDFPLAPELMHAIQDLGFPYCTP
IQAGVLGYTLKGRDAIGRAQTGTGKTAAFLISIITQLTQTPPPKERYMGEPRALIIAPTR
ELVVQIAKDAEALTKYTDLNVMTFVGGMDFDKQLKHLEARHCDILVATPGRLLDFAQRGE
VHLDMVEVMVLDEADRMLDMGFIPQVRSIIRQTPHKGERQTLLFSATFTEDVMNLAKQWT
TDPAIVEIESLNVASDTVEQHIYAVAGADKYKLLFNLINDHGWERVMVFANRKDEVRRIE
ERLVRDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL
PEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEEKLGRKISCETPPTVLLRPVV
RVQRAIPAAE
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcacttaaaaagatgttcggaaaaagcgaggctgagccgctcgcg
cctgctgccccccttcccgtcccccagcgccagaccgaaagcgtctcgcgggaaccgtca
gcagcagaagtgcacgtgccaatgccagagcattcggcagccattgcaccgcccgtcact
tcgcccaccagggcggaacgcccgcgccgcgaacgtgcacccaagcccgtcgttattccc
tggaaacccgaagacttcgtcgtcgaaccccaggaaggcaaaacccgtttccacgatttc
cccctcgcccctgaattgatgcacgccatccaggacctgggcttcccgtactgcacgcct
atccaggcgggcgttctgggttacaccctcaaaggccgcgatgccatcggccgcgcccag
accggcactggcaagaccgccgctttcctgatttccatcattacccagttgacccagacg
cctccgccgaaggagcgctacatgggtgagccccgtgcgctgatcattgcgcccacccgt
gagctggtggtgcagatcgccaaggacgccgaggcgctgaccaagtacaccgacctcaac
gtgatgacgttcgtcggcggcatggatttcgacaagcagctcaagcacctcgaagcccgc
cactgcgacatcctggtcgccacgccaggccgtctgctggacttcgcccagcgcggcgaa
gtgcatctggacatggttgaagtgatggtgctggacgaagctgaccgcatgctcgacatg
ggcttcatccctcaggtccgctcgatcattcgccagaccccgcacaagggcgagcgccag
acgctgttgttctccgccacctttaccgaggatgtgatgaacctggccaagcagtggacg
acggaccctgcgatcgtcgagatcgaatcgctgaacgtcgccagtgacacggtcgagcag
cacatctatgccgtcgccggcgccgacaagtacaagttgctgttcaacctgatcaatgat
cacggttgggagcgggtgatggtcttcgccaaccgcaaggatgaagtgcgacgcatcgaa
gagcgtctggtgcgagacggcatcaatgctgcgcagttgtcaggcgacgtgccgcagcac
aagcgcatcaagaccctggaaggtttccgcgaaggcaagattcgtgtgctggtggccact
gacgtggcgggtcgcggaatccacatcgacggcatcagccacgtaatcaacttcaccctg
ccggaagtaccggacgactacgtacaccgcatcggccggaccggtcgtgctggcgcggac
ggcgtgtccatcagtttcgctggtgaagacgattcgtatcagttgccgtcgatcgaagag
aagctgggtcgcaagatcagctgcgaaacgccgccaaccgtgttgttgcggccagtggtg
cgtgtgcagcgggcgattcctgcggcggaatga
DBGET
integrated database retrieval system
