Pseudomonas graminis: FX982_01048
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Entry
FX982_01048 CDS
T06934
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pgg
Pseudomonas graminis
Pathway
pgg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FX982_01048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgg03021
]
FX982_01048
03400 DNA repair and recombination proteins [BR:
pgg03400
]
FX982_01048
Enzymes [BR:
pgg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FX982_01048
Transcription machinery [BR:
pgg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FX982_01048
DNA repair and recombination proteins [BR:
pgg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FX982_01048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF3150
Biotin_lipoyl
Phage_DsbA
Motif
Other DBs
NCBI-ProteinID:
QKF50121
UniProt:
A0A4R7VDY7
LinkDB
All DBs
Position
complement(1134978..1139177)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVKNTRIVDTTVGRALLFQVVPAGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKEKVVDRHGETVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPGGTLVDEKWVEFIELNSIDEVIVRSPISCETRFGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGIVRL
HNLKHVERLDGHLVAVSRSGELAIADEFGRERERYKLPYGAVILVKEGDKVDAGSIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGLTNIEVLDAKDRPAAGKDIRPAVKM
VGVDGKDLLLPGTDVPAQYFLPANALVGVADGVQVGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGTDPYEELIPKWRHLNVFE
GEQVSRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLAADEKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREADKPMR
VSASEVEAALTEALNSSSN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaaa
ccggaaaccatcaactaccgtacgttcaaaccagagcgtgacggcctgttctgcgccaaa
atctttggcccggtcaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcat
cgtggcgtcatctgcgagaagtgtggcgttgaagtcgcactggccaaagtccgtcgtgag
cgcatggctcacatcgaactggcatcgccggtcgctcacatctggttcctgaagtcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgatccgggcatgaccacgctcgaaaaagggcaactgctg
aacgacgagcagtacttcgaagccctcgaagagttcggtgatgacttcgacgcccgtatg
ggtgccgaggctgtccgtgagctgctgcacgctattgatctggaacacgagattggccgt
ctgcgcgaagagattccgcaaaccaactccgaaaccaaaatcaagaagctgtccaagcgc
ctgaagctgatggaagccttccagggttccggcaaccttccagagtggatggtgttgacc
gttctgccggttctgccgccagacctgcgtccactggttccactggacggtggtcgtttt
gcgacctctgacctcaacgatctctatcgtcgggtgatcaaccgtaacaaccgtttgaag
cgcctccttgatctgtctgctcctgacatcatcgtgcgtaacgaaaagcgcatgctgcag
gaagctgtcgatgcgctgctcgataacggtcgtcgcggtcgtgccatcactggttcgaac
aagcgtcctctgaagtccctggctgacatgattaagggtaagcagggccgtttccgtcag
aacttgctcggtaagcgtgttgactactctggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggcactggagctgttcaagccgttc
attttcggcaagctcgaaatgcgtggtctcgcaaccaccatcaaagctgccaagaaaatg
gttgagcgcgagctgccagaagtctgggacgttctcgccgaagtgattcgcgaacaccca
gtgcttctgaaccgtgcgccgacgcttcaccgtctgggcattcaggcgtttgagccggtt
ctcatcgaaggtaaagcgatccagctgcacccgctggtctgtgcggcatacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgacgctggaagctcagctcgaagcc
cgtgcgctgatgatgtcgacaaacaacattctgtccccggctaacggtgaaccaatcatc
gttccttcgcaggacgttgtattgggtctgtactacatgacccgtgaagcgatcaacgcc
aaaggcgaaggtcgtgtgtttgcggatctgcaggaagttgaccgtgtgttccgtgctggc
gaagccgcactgcatgcgaaagtaaaagtgcgcatcaacgaaactgtcaatgatcgtgac
ggtggcagcgtcaagaacactcgtatcgtcgacacaaccgttggccgtgcgttgctgttt
caggtggttccggccggcctgtcatacgacgtcgtcaaccagccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctatcgcgtggttggcctgaaagagaccgttatcttc
gctgaccagttgatgtacaccggttttgcttactcgacgatctcgggtgtttccatcggc
gttaacgacttcgttatccctgatgaaaaagctcgcatcatcgacgcagcgaccgatgaa
gtgaaagagatcgaaagtcagtacgcctcaggcctggttacccagggcgagaagtacaac
aaggtgatcgacctctggtccaaggccaacgacgaagtctcgaaagcgatgatgtcgaac
ctctcgaaagagaaggttgtcgaccgtcacggtgagaccgttgatcaggaatccttcaac
tcgatgtacatgatggccgactctggtgcgcggggttccgctgcacagattcgtcagctg
gcaggtatgcgtggtctgatggccaagccggatggctcgatcatcgagacgccgatcact
gcgaacttccgtgaaggtctgagcgtacttcagtacttcatctcgactcacggtgctcgt
aagggtcttgcggataccgcgttgaaaaccgcgaactccggttacctgactcgtcgtctg
gtagacgttgcacaagatctggtcgttaccgaggttgactgcggtaccgagcacggtctg
gtcatgacaccgcacattgaaggtggtgatgttgtcgagccgttgggcgagcgcgtattg
ggtcgagtgatcgcccgtgacgtattcaagcctggcactgaagacgtcatcgttccaggc
ggcacgctggttgacgagaagtgggttgaattcatcgagctgaacagcatcgacgaagtg
atcgtacgctctccgatcagctgtgaaacgcgtttcggtatctgcgccaagtgctacggc
cgtgatctggctcgcggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgcg
cagtcgatcggtgagccgggtacccagctgacgatgcgtacattccacatcggtggtgcg
gcaagccgtacttctgctgcggacagtgttcaggttaagaacggcggtatcgttcgtctg
cacaacctgaagcacgttgagcgccttgatggccacctggtcgcggtttcgcgttccggt
gagctggcaattgccgacgaattcgggcgtgagcgcgagcgttacaagctgccgtatggt
gctgtgattctggtgaaggaaggtgacaaggtcgacgcagggtccatcgtggccaagtgg
gatccgcacactcacccaatcgtcaccgagatgaaaggtaccgtgacctacgtgggcatg
gaggaaggtattacgatcaagcgccagaccgatgaattgaccggtctgaccaacatcgaa
gtactggatgccaaggatcgtcctgcagcaggcaaggatattcgtcctgcggtcaagatg
gttggtgtggatggcaaggatctgttgctgccaggtactgacgtacctgctcaatacttc
ctgcccgctaacgccctcgtcggtgttgcggatggtgtgcaagtgggtgtcggtgacgtt
atcgcccgtatcccgcaagagacgtccaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagcgcgtcgccctaaggaagcatcgatcctggctgaggtcagc
ggtacgatcgcgttcggtaaagagaccaaaggcaagcgccgtctggttatcacgccaaac
gatggtaccgatccgtacgaagagctgattccaaagtggcgtcacctcaacgtcttcgaa
ggtgagcaggtaagccgtggtgaggttatctccgacggtcctagcgatccgcacgatatc
ctgcgtctgctgggtgtcagcgctctggcgaaatacatcgtcaacgagattcaagacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagacgatccttcgtcagatg
ctgcgtaaagtcgagattgctgagtcgggcgactcgagcttcatcaagggtgatcagatg
gagttgacgcacgtactggttgaaaacgagcgcctggcggccgacgagaaatttgtttcg
aaatttactcgtgtgttgcttggtatcaccaaggcctcgctgtccaccgaatcgttcatc
tcggcagcctccttccaggagaccactcgcgtactgaccgaggcggcggttaccggcaag
cgcgattatctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccagcaggt
accggtctggcatatcacagcgagcgcaagcgtcgtcgtgaagccgacaagccaatgcgt
gtaagtgcgagcgaagttgaagccgcgctgaccgaagcgttgaactcaagcagtaattga
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integrated database retrieval system
