Pseudomonas graminis: FX982_01119
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Entry
FX982_01119 CDS
T06934
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pgg
Pseudomonas graminis
Pathway
pgg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pgg00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FX982_01119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgg03021
]
FX982_01119
Transcription machinery [BR:
pgg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FX982_01119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Peripla_BP_4
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QKF50183
UniProt:
A0A6M8MIX9
LinkDB
All DBs
Position
1210794..1212638
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AA seq
614 aa
AA seq
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MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHES
APDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVEHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAEV
LPPVDPKAEKVEGADDEEEDASDDEEDEVESGPDPVIAAQRFGAVSDQMAIALKALKKHG
RGSKQANAELLALAELFMPIKLVPKQFEGLVERVRGALERLRAQERAIMQLCVRDARMPR
ADFLRQFPGNEVDQSWTDGLAKGKSKYAEAIGRLQADIQRCQQKLTALEEETGLTILEIK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVES
LKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPTRSEHLRSFLDE
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcaccctgggtcgtgag
cagaagtatctgacttacgcagaggtcaacgaccacctgcctgaggatatttcagatcca
gagcaggtggaagacatcatccgcatgatcaacgacatggggatccccgtacacgagagt
gctccggatgcggacgcccttatgttggccgacgccgacaccgacgaggcagccgctgaa
gaagccgctgctgcgttggctgcggtcgagaccgacatcggtcgcacgactgacccagtg
cgcatgtacatgcgtgagatgggtaccgtcgagcttctgacacgtgaaggcgaaatcgaa
atcgccaagcgtatcgaagaaggcatccgtgaagtgatgggcgccatcgcgcacttccct
ggcacggttgagcacattctctccgagtacacccgcgtcaccaccgaaggcggtcgtctg
tccgacgtcctgagcggttatatcgacccggacgacggcatagcgccgccagccgaagtc
ctgccgccagtcgatccgaaggccgagaaggtcgaaggtgctgacgacgaagaggaagac
gcttccgacgatgaagaggacgaggtcgaaagcggcccggacccagtcatcgccgcccag
cgcttcggtgccgtttcagaccagatggccattgccctcaaggcgctgaaaaagcacggt
cgtggcagcaagcaggccaacgctgaactgctggctctggccgagctgttcatgccgatc
aagctggttccaaaacagtttgaaggcctggttgagcgtgttcgcggtgcccttgagcgt
ctgcgggcacaagagcgtgccatcatgcagctgtgtgttcgtgatgcacgtatgccgcgc
gccgacttccttcgccagttcccgggcaacgaagttgaccagagctggaccgatgggctg
gccaaaggcaaaagcaaatacgctgaagccattggtcgtcttcaggccgacattcagcgt
tgccagcaaaagctgaccgcactggaagaagaaaccggcctgaccattttggaaatcaag
gacatcaaccgtcggatgtcgatcggtgaggccaaggcccgccgcgcgaagaaagaaatg
gttgaagccaacctgcgtctggtgatctcgatcgccaagaagtacaccaaccgtggcctg
caattcctcgatctgatccaggaaggcaacatcggtttgatgaaggcggtggacaagttc
gaataccgtcgtggttacaagttctcgacgtacgccacctggtggattcgtcaggcgatc
actcgctcgatcgctgaccaggcacgcaccatccgtattccggtgcacatgatcgagacg
atcaacaagctcaaccgtatttcccgtcagatgttgcaggaaatgggtcgcgagccgacg
ccggaagagctgggcgaacgcatggaaatgcctgaggacaagatccgcaaggtattgaag
atcgctaaagagccgatatccatggaaaccccgatcggtgacgacgaagactcgcatctg
ggcgacttcatcgaagactcgaccatgcagtcgccaatcgatgtcgccacggttgagagc
ttgaaagaagcgacgcgcgaagtgctgtcgggcctcaccgcccgtgaagccaaggtactg
cgtatgcgtttcggtatcgacatgaacaccgaccacacccttgaggaagtcggtaagcag
ttcgatgttacccgtgagcgtatccgtcagatagaagccaaggcgttgcgcaaactgcgt
caccctacgcgaagcgaacacctgcgttcgttcctcgacgagtaa
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