Pseudomonas graminis: FX982_01228
Help
Entry
FX982_01228 CDS
T06934
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pgg
Pseudomonas graminis
Pathway
pgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FX982_01228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgg03019
]
FX982_01228
Enzymes [BR:
pgg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FX982_01228
Messenger RNA biogenesis [BR:
pgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FX982_01228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
P-loop_SecA
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QKF50291
UniProt:
A0A6M8MKN8
LinkDB
All DBs
Position
1329459..1331378
Genome browser
AA seq
639 aa
AA seq
DB search
MSFASLGLSEALVSAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKIYAKNLKFVSTCIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPSKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLPANHKRSLL
AHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGTV
RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNPRNARGPRGDGPNGGGGGGG
RKDKGKDKGKEKPAAAAASGERPARPARPQKPRQGTASSESRQSQPAASGANRAPDEFLD
DEVDNFGNRADYVSPYQNKNQSRGRRPGAPATGAAPAPRGQAPGRSGPRGGSGSGSATGA
PASTDTAGAPAKRSGPRNGSGRDGQARREDSPRARRPAREDQPARQEPAVRGPRDGQPAP
KIMHKESKGDRFPSAEQLDQLPSRPRGEKPALLTRNREG
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcagcgccatcgaggctgctggc
tacacccagcctaccccagtgcaacagcgggccattcccgccgtgttgcaaggccgcgat
ctgatggtcgccgcccagacaggtactggtaaaaccggtggtttcgccctcccaatcctg
gagcggttgtttcccaacggtcatccggacaaatcccagcgtcacggcccgcgccaaccc
cgcgttctggtcctgaccccgacccgtgaactggccgctcaagtccacgacagcttcaag
atctacgccaagaacctcaagttcgtcagtacctgcatcttcggcggtgtcggcatgaac
ccacaggtccaggccatggcgcgcggcgttgacgtactggtcgcctgcccgggtcgtttg
ctcgatctggccggtcagggcagcgtcgatctgtcccacgttgagatcctcgtactcgac
gaagctgaccgcatgctcgacatgggcttcgttcacgacgtgaagaaagtcctcgcgcgc
ctgccgtccaagcgtcagaacctgctgttctcggcaacgttctcccaggacatcaccgcg
ctggccggcaaactgctgcacaacccggaacgtatcgaagtcacgccgccgaacaccacg
gtcgagcgcatcgaacagcgcgtcttccgcctgccagccaaccacaaacgctcgctgctg
gcgcacttgatcacccaaggcgcgtgggagcaagtgctggtgtttacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggataagcatggtctcagcgctgtggctatccac
ggcaacaagagccagaacgcgcgcaccaaagcgttggcggatttcaaggctggcaccgtc
cgcatcatggtcgcgaccgacatcgctgcccgcggtctggacatcgaccagttgccacac
gtggtcaacttcgagctgcctaacgtcgatgaagactacgtgcaccgcatcggtcgtacc
ggtcgcgcaggccgtagcggcgaggcgatctcgctggttgcgccggacgaagagaagctg
ctgaaaagcatcgagcgcatgaccaagcaaaagattgccgacggcgatctgatgggcttc
gacatcacggccgttgaagccgagaagccggaagtccgcgagcgtccggacgtgcgtaac
ccgcgcaatgcccgtggcccgcgtggcgacggtccgaacggcggcggcggtggtggcggt
cgcaaggacaaaggcaaagacaaaggcaaggaaaagccggccgctgcagcagcttcgggc
gagcgcccggcacgtccggcacgcccgcaaaagccgcgtcagggcacggcgtcgagcgaa
tcacgtcagtcgcagccagcggcgtcaggtgcgaatcgcgcacccgacgaattcctcgat
gacgaagtggacaacttcggtaaccgcgccgactacgtcagcccgtaccagaacaagaac
cagagccgcggtcgtcgtccgggcgctcctgccactggggccgcaccggcaccacgtggt
caggcgccaggccgtagcggtccgcgcggtggttcaggcagcggttcggccactggcgct
cccgccagcaccgataccgccggcgctccggccaaacgcagcggtcctcgcaacggctcc
ggccgtgatggtcaggctcgccgtgaagactcgccacgtgcccgtcgtccggcacgcgaa
gaccagccagcgcgtcaggagccagcagttcgcggccctcgcgacggtcagcctgcaccg
aagatcatgcacaaagagtccaagggcgatcgtttcccttcggctgaacaacttgatcag
ctgccaagccgcccacgcggtgaaaaaccagccctgctgacccgcaaccgcgaaggttaa
DBGET
integrated database retrieval system
