Pseudomonas graminis: FX982_02030
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Entry
FX982_02030 CDS
T06934
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pgg
Pseudomonas graminis
Pathway
pgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FX982_02030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgg03019
]
FX982_02030
03016 Transfer RNA biogenesis [BR:
pgg03016
]
FX982_02030
Enzymes [BR:
pgg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FX982_02030
Messenger RNA biogenesis [BR:
pgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FX982_02030
Transfer RNA biogenesis [BR:
pgg03016
]
Prokaryotic type
tRNA degradation factors
FX982_02030
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
QKF51082
UniProt:
A0A6M8MLU8
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All DBs
Position
2249850..2252468
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AA seq
872 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLSERGSPAAREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVISRAHETVVGRYFEESGIGFVQPDNPKIQQEV
LITPGRNNGAKVGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPQVEEKDKENRVDLRHLPFVTIDGEDARDFDDAVFCEAKPGKLRLFS
GGWKLYVAIADVSSYVKLGSALDAESQVRGNSVYFPERVIPMLPEQLSNGLCSLNPLVDR
LAMVCEMTISKTGEMTDYVFYEAVIHSHARLTYNKVSSMLEHPKAAEAKQLREQYGDVVP
HLKQLYALYKVLLGARHVRGAIDFETQETRIIFGTERKIAEIRPTTRNDAHKLIEECMLA
ANVATAAFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLE
TIKDRPDYHLIQTVMLRSLSQAVYSSDNHGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIRSKQETPHVRRAGAPVIPKARIYPYDEAMLEQLGEQCSMSERRADEATRDVTNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMSEKTTSAPIGRKRRTSEPAAAEKGKDSKESSSA
SKSGRRTAKEPVAEAYRPSDAAAKNAEVRKSREMKKALLTEAKGGSKASSGKSTSDSAGA
SGKTSKHRKGSSKSGSASASGGGSVRKPKAKS
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cccatccctagccgtgagctgattctggcgcacctctccgagcgcggttcgcctgctgcc
cgggagcagttggtggaagagtttggcctgacgactgaagatcagatcgaggccttgcgg
cgtcggctccgtgccatggagcgcgatgcccaattgatttacacccgccgtggcacgtac
gcaccggtcgacaagctggacctcatcctgggtcgcatcagcggtcaccgtgacggcttc
ggtttcctagtcccggatgatggctccgacgacctgttcatgagccctgcgcagatgcgt
ctggtgttcgacggtgaccgcgcactggcacgcgtctcgggtctggaccgtcgcggtcga
cgcgaaggcgtgattgtcgaagtcatttcccgcgcgcacgaaaccgtagtgggtcgctat
ttcgaagaaagcggcatcggtttcgttcagccggacaacccaaaaatccagcaagaagtg
ctgatcacccctggccgtaacaacggcgccaaggtcggtcagttcgtcgaggtgaaaatc
acccactggccgaccccgcgtttccagccgcagggcgacgtggttgaggtggtgggcaat
tacatggcgcccggcatggagatcgatgtcgcgctgcgtacctacgacattcctcacgtt
tggcccgaggcggtgctcaaagaagccgcgaagctgaagccgcaagtggaggagaaggac
aaggaaaaccgcgtcgatctgcgtcaccttccattcgtcaccatcgacggtgaagacgcc
cgcgacttcgacgatgctgttttctgcgaagccaagcccggcaagctgcgcctgttctct
ggcggctggaagctctatgtggcgatcgccgatgtatcaagctacgtgaagctcggctcg
gcgctcgacgctgagtctcaggtgcgcggcaactcggtgtatttccctgagcgtgtgatc
ccgatgcttcctgagcagctgtccaacgggctgtgttcgctgaatccgctggttgatcgt
ctggcaatggtttgcgagatgactatctccaaaaccggcgagatgaccgactacgttttc
tatgaagccgtgatccactcccatgcacgcctgacctacaacaaggtcagctcgatgctg
gagcatcccaaagccgccgaagccaagcagctgcgcgagcagtatggcgacgtcgtgccg
cacctgaagcagctttatgcgctgtacaaagtgctgttgggagcccggcatgtccgcggt
gccatcgattttgaaacccaggaaacccggattattttcggcactgagcgcaaaatcgcc
gagatccgtccgaccactcgaaacgatgcgcacaagctgattgaagaatgcatgctcgct
gcgaacgtggcgactgctgcgtttctcaagaagcacgagatccctgcgctgtatcgcgtg
cacgacggtccgccgcctgagcgcctggaaaagctgcgtgccttcctcggcgagttgggt
ctttccctgcacaagggcaaagacggcccgacgccgaaggactatcaggcgctgctcgaa
accattaaggaccgtccggattaccacctgatccagaccgtcatgctgcgttcgttgagc
caggcggtgtacagctcggataaccatggccactttggtttgaattacgaggcgtacacc
cacttcacctcgccgattcgtcgctacccggacttgctgactcaccgcgcgatccgcagt
gtgatccgctccaagcaggaaacgccgcacgttcgccgtgccggtgctccggtcattccg
aaggcccgtatttacccgtacgacgaagcgatgctcgagcaactgggcgaacagtgctcg
atgagcgagcgccgtgccgatgaggcaacccgcgacgtgacgaactggctgaaatgcgag
ttcatgaaagaccgcgttggcgagtcgttcccgggcgtgatcacggcagtcaccggcttt
ggtctgttcgtcgagctgaccgatatctacgtcgaaggcctggtgcacgtcaccgcattg
ccgggtgactactaccacttcgatccggtccatcatcgcctggccggcgagcgcacaggc
cgtagcttccgcctgggcgacaccgttgaagtgcgtgtcatgcgtgttgatctggacgag
cgcaagatcgatttcgaaatgtccgagaaaaccaccagcgcgccgatcggccgtaagcgt
cggacgtccgagcctgccgcggcagagaagggcaaggattccaaggaatcgtcgtctgct
tccaagtccggtcgccgcactgcgaaagagcctgttgccgaggcctatcggccaagtgat
gcggctgccaagaatgcagaagtgcgcaaaagccgtgaaatgaaaaaagccctgctgact
gaagccaagggtggtagcaaggcatcgtcgggaaagtcgacgagtgattctgctggggct
tccggtaaaaccagcaagcatcgcaaaggctcgtccaagtcgggttcggcctctgcttca
ggcggtggcagcgtgcgcaaacctaaggcgaagtcatga
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