Pseudomonas graminis: FX982_04084
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Entry
FX982_04084 CDS
T06934
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pgg
Pseudomonas graminis
Pathway
pgg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pgg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FX982_04084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgg03400
]
FX982_04084
Enzymes [BR:
pgg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FX982_04084
DNA repair and recombination proteins [BR:
pgg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FX982_04084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QKF53092
UniProt:
A0A6M8MS91
LinkDB
All DBs
Position
4535339..4538035
Genome browser
AA seq
898 aa
AA seq
DB search
MSAELDEYNRKRDFNATSEPSGNTKKKRASSRKAAHALQFCIQKHDASRLHYDFRLEIDG
TLKSWAVPKGPSLDPKAKRLAVHVEDHPVEYATFEGNIPEGHYGAGDVIVWDRGVWTPLS
DPADAYAKGKLKFELLGEKLGGVWNLVKTHIPGKQEQWFLIKHQDEFARPEADYDVVKAL
PDSVLSERTLIPRKRGAKPASAKSAKSTAEKPKPVEKVPAPRKKSAKAQLVGAEPAELPD
LIKPELATLVESAPGGDWRYEIKFDGYRVMARVADGKVQLFTRNGHDWTHKLPRQAEAIA
GLALESAWLDGEMVVANDDGVPDFQALQNAFEAGRSGNIIYYLFDMPFLNGMDLREVPVE
QRRAALSKVLERTDDEVLRYSEDFAEVPEVLLNSACQMKMEGLIGKRAGSPYVSRRSGDW
IKLKCKRRQEFVVVGYTDPKGARSKFGALLLGLHDADSGELRYAGKVGTGFNEATLGTIY
DQLTPLHAKKAAAVNPPTGFEAKGVHWLKPALLAEVAFAEITKEGSVRHAVFHGLRTDKP
AESITEELPASAPSDDQSSESARASDVPEEQLEDTPTPAPPRKRAKTSKPVKAQESPRES
DAADTRTGKIRLTHPERVIDPTSGATKRDLADYYVRISDWLLPQLAQRPVALVRAPEGIG
GELFFQKNADRLAIPGIETMGKEYTGHPVMLINNVEALIGAVQMSTMELHTWNAVAKNLE
RPDRFILDLDPDPALPWKTMVEATQLTLAVLDELGLKSFLKTSGGKGIHVVVPLTPKADW
DAVKDFSHAIVKHIARLLPERFSAVSGPKNRIGKIFIDYLRNGLGATTICAYSVRTREGL
PVSVPIYREELLEIKGANAWDIHTVHERLAELDSDPWADLGKTRQTITADMRKRVGLK
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccgaactggacgaatacaaccgcaagcgcgatttcaacgcgacatctgagccg
tcaggcaacacgaagaaaaaacgcgcctcgtccaggaaggctgcgcacgccctgcagttc
tgtattcaaaagcatgacgcatcacgcctgcattacgacttccgcctcgaaatcgatggc
acgctgaaaagctgggcagtgcccaaaggtccgtcgctggaccccaaggccaaacgcctg
gcggtgcacgtcgaggatcaccccgttgaatacgccaccttcgagggcaacattcccgag
gggcattacggtgcgggcgacgtcatcgtctgggaccgcggtgtgtggacacccctctcc
gaccctgccgacgcctatgccaagggcaagctcaaatttgaattgctgggtgagaagctt
ggcggcgtgtggaacttggtcaagacccacattcccggcaagcaggaacagtggtttctg
atcaagcatcaggacgaattcgcccgcccggaagctgactacgatgtggtcaaggcgctg
cccgacagcgtgctcagcgagcgcaccctgattcccagaaagcgcggcgcaaagccagcg
tctgccaagtcggcgaagtccacggctgagaagccaaagcccgtggagaaagtccccgcc
cctcggaaaaaatccgccaaggcgcagctggtgggcgccgagcccgccgagctgccggat
ctcatcaagcccgaactggccactttggtggaatctgcccctggaggcgactggcgctac
gagatcaaattcgacggctaccgggtcatggctcgggtcgccgacggcaaggtgcagctg
ttcacccgcaatggccatgactggacccacaaactgccgcgccaggccgaggccatcgcc
ggtctggctcttgagtcggcctggctcgacggcgagatggtcgtcgccaacgatgacggc
gtgcctgacttccaggcccttcagaatgccttcgaagccggccgcagcggcaacatcatt
tattacctgttcgacatgccctttctgaatggcatggacctgcgtgaggtgccggtggaa
cagcgccgcgccgcgctgtccaaggtgctcgaacgaacggacgacgaggtgctcaggtac
tccgaagacttcgccgaagtaccggaagtcctgctcaacagcgcctgccagatgaagatg
gaaggcctgatcggcaagcgcgccggcagcccttatgtgtcgcgccgcagcggtgactgg
atcaagctcaagtgcaaacgtcgccaggaattcgttgtcgtgggctataccgatccgaag
ggcgcacgcagcaaattcggcgcgttgctgttgggtttgcacgacgccgacagtggcgag
ctgcggtacgccggcaaagtcggcaccggtttcaatgaagcgacattgggcacgatttac
gaccagctgacaccgctccacgcgaagaaggccgcggcggtcaatccgcccaccggtttc
gaggccaaaggcgtgcactggcttaaacctgcattgctggcggaagtcgccttcgccgag
atcaccaaagaaggatcggtgcgccacgcggtgttccatggcctgcgcaccgacaaacct
gcggagtccatcaccgaagagcttccggcgtcggcgccttctgacgatcaatcgtcggag
tccgcgcgggcgtcagacgtgccagaagagcagctggaagacacgccaacacctgcgccc
ccacgcaagcgcgcgaagacatccaaacctgtcaaagcgcaagagagtccgcgtgaatcc
gacgccgccgataccagaaccggcaagatccgcctgacccaccccgagcgggtgatcgat
cccaccagcggcgcgaccaagcgtgatctggccgattactacgtccgcatatccgactgg
ctcctgccgcaactggcccaacgccccgtcgcgctagtgcgggcgccggagggcatcggc
ggcgaactgttcttccagaaaaacgccgaccgcctcgccatccccggcatcgagaccatg
ggcaaggaatacaccggccatccggtcatgctgatcaacaacgttgaggcgctgatcggc
gccgtgcaaatgagcacgatggagctgcacacctggaacgcggtcgccaagaatcttgag
cggccggaccgtttcattctcgacctagaccctgatccggcgctgccctggaaaaccatg
gtggaagccacgcagctgacgctcgccgtgctggatgaactggggctcaaatcgttcctg
aaaaccagcggcggcaagggcattcatgtggtcgtaccgctgacgccgaaggccgactgg
gacgccgtgaaggacttcagccacgccatcgtcaagcacatcgccaggctgctgccggag
cggttttcggcggtgtcagggccgaagaaccgcattggcaagatcttcatcgattacctg
cgcaacggcctcggcgctacgaccatttgcgcgtactcggtgcgcacacgggagggtctg
ccggtgtcagtgccgatctaccgcgaggaattgctggaaatcaaaggtgcaaacgcctgg
gacatccacaccgtccacgaacgcctcgccgaactcgacagcgacccctgggcggacctg
ggcaaaacccgacagaccatcacggcagacatgcgcaagcgcgtcggccttaaatga
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