Photobacterium ganghwense: FH974_01405
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Entry
FH974_01405 CDS
T07175
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FH974_01405 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgh03021
]
FH974_01405 (rpoA)
03400 DNA repair and recombination proteins [BR:
pgh03400
]
FH974_01405 (rpoA)
Enzymes [BR:
pgh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FH974_01405 (rpoA)
Transcription machinery [BR:
pgh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FH974_01405 (rpoA)
DNA repair and recombination proteins [BR:
pgh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FH974_01405 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF4843
Motif
Other DBs
NCBI-ProteinID:
QSV14363
LinkDB
All DBs
Position
1:277906..278895
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVNTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVKVEGKDEVIITLNKSGAGPVVAGDITHDGD
VEIANPEHVICHLTDDNAEISMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPV
DRIAYSVEAARVEQRTDLDKLVIDMETNGTLDPEEAIRRAATILAEQLDAFVDLRDVRVP
EEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIAED
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtaacagaatttcttaagccacgtcttgttgatattgaacaagttaac
acgacgcacgcaaaagtaactcttgagccactagagcgtggttttggccacactctgggc
aacgctctacgtcgtattcttctatcttctatgccgggttgtgccgttactgaagtagaa
atcgacggtgtgttacacgagtacagcaccaaagaaggagtacaggaagatattcttgaa
atccttctaaaccttaaaggcctagccgttaaggttgagggtaaagatgaagttatcatt
actctgaacaaatctggtgcaggccctgttgttgcaggtgacatcacccacgacggtgat
gttgagattgcgaacccagaacacgtaatctgccacctaactgatgacaatgctgaaatc
agcatgcgcatcaaggtagagcgtggtcgtggctacgtaccggcgtctgctcgtattcac
acagaagaagacgagcgcccaattggccgtctgttagttgacgcaactttcagcccagtt
gaccgtatcgcatacagcgttgaagcagcacgtgttgaacagcgtactgacctagataag
ctggttatcgatatggagactaacggtactcttgaccctgaggaagctattcgtcgcgca
gctactattctagctgagcaactggatgcattcgtagatctgcgtgatgtacgagttcct
gaagagaaagaagagaagccggagttcgatccgatcctactgcgtcctgtagacgatctt
gaactaactgttcgctctgctaactgtttgaaagcagaagcgatccactacatcggtgat
ctcgttcagcgtactgaggttgagcttcttaaaacgcctaacctgggtaagaagtctttg
acagaaatcaaagacgtgctggcatcacgtggcctgtctctgggtatgcgcctagaaaat
tggccgccagcatcaattgctgaagattaa
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