Photobacterium ganghwense: FH974_01495
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Entry
FH974_01495 CDS
T07175
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
pgh
Photobacterium ganghwense
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgh03019
]
FH974_01495 (csrD)
Messenger RNA biogenesis [BR:
pgh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FH974_01495 (csrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
QSV14374
LinkDB
All DBs
Position
1:303525..305468
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AA seq
647 aa
AA seq
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MRKASGMRLTNRLVAFVTVIVICAMFVIFIGGAVSFRKLGQDYLTHYLDGVVEVIDQEMA
DPQGAQSLSRWLPKLLKASNVMELEVSSEAGVIYSFKGLQTLNDPSILYRSRYELQHNPG
YFVDMKSIPPYTEFTYSLGAMSSISLAIAIIIAGLIWGMDWLRRQLLGSELLEHRGRMIL
AGRVEENEIGDEREWPATASLALDKMIAELKDARQERSRFDTFIRTHTFLDQLTGAANRV
MFDSRLQSMLQDQETHGAVILVRIADWEELLAEKGKEEADELIQDVGGILSNLVQRYPDT
VLARYFDAEFAILLGQQSVKEVKQFANTMMNALDRLSPPTPLDKENWCHIGVTSWVSGER
RGRIMDEADMALRSAQLQGTNGWFAFKKDQQVEDARGSVRWRTLLDSIFSSGGPLLYQQP
VIMADGTTLHRELLSRIRDENGMLIKASRFLSAVEQVGFNARMDQQVISKTLNMLRNEPV
EDALSVNVSVEALLDKAFVKWLRDELLQTPRTVLNRLSFEIPESGLVKHLDAIRPVARIL
VGLGCKLVVDQAGRTIVSTHYIKDIKVDIIKLHRGLVREIDLRQENQLFVRSMLGVCADS
AVQVVAVGVENQNEWQVLKQLGVKGGQGRYFAAELSLEKPESPRKQK
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaagcgtcaggaatgagactgaccaaccggttggttgcttttgttaccgtcatt
gtgatctgtgcgatgttcgtcatttttatcggcggcgccgtcagtttccgtaaactgggc
caggactacctcacccactaccttgatggggtggtggaagtgattgatcaggaaatggcc
gatcctcagggagcgcagtccctgtcgcgctggctgcctaaattgctcaaagccagcaat
gtaatggaactggaagtcagcagcgaagccggggtgatctacagttttaaagggctgcag
accttaaacgatccctccattctgtatcggagccggtatgagctgcagcacaacccaggc
tacttcgtggacatgaagtcgatcccgccatacaccgaatttacctattctctcggggcg
atgtcgtccatcagtctggccatcgcaatcattatcgccgggctgatatggggcatggac
tggctgcgtcgccagctgctcggctctgaattactggaacaccgaggccggatgattctg
gccggacgggtcgaagagaacgaaattggcgatgagcgggagtggccggccacggccagt
ctggccctggataagatgatagccgagctgaaagatgcccggcaggagcgcagccggttc
gatacttttatccgtacccatactttcctggatcagctgacgggcgcggccaaccgggtg
atgttcgacagccgtttgcagtccatgctgcaggatcaggaaacccacggggccgtgatt
ttggtgcggattgcagactgggaagagctgttggcggagaaaggcaaagaagaagcggat
gaactgattcaggacgtcggcggcatcttgtcgaacttggtgcagcgctatcccgatacc
gtactggcgcgttatttcgatgccgaatttgcgattttgctgggacaacagtcggtgaaa
gaggttaaacagttcgccaataccatgatgaacgccctcgaccggctcagcccgcccaca
ccactggacaaggaaaattggtgccacattggtgtgacttcctgggtcagcggggagcgg
cgaggccgtatcatggacgaagccgacatggcgctgcgcagtgcccagctgcagggcacg
aacggctggtttgcctttaaaaaggatcagcaggtggaagacgcccgcggcagtgtgcgc
tggcgaactctgcttgacagtattttcagcagcggcggcccactgttgtaccagcaaccg
gtgatcatggctgatggtacgacgctgcaccgtgagctgttgtcccggatccgggatgaa
aacggcatgctgatcaaggcctcgcgtttcctcagcgcggtggagcaggtgggattcaat
gcccgcatggatcagcaggtgatcagcaagacgttaaatatgttgcgcaatgaaccggta
gaagatgcactgtcggtcaatgtgagtgtggaggcgctgctcgacaaggctttcgtcaaa
tggctgcgggacgagctgctgcagacgccgcggacggtgctgaaccggctgtcgtttgag
atcccggaaagtggcctggttaagcatctggatgcaattcgtccggtggcccgaattctt
gtcggcctgggctgtaagctggtggtcgatcaggccggacgcacgattgtcagtacccat
tacatcaaggatatcaaggtcgatatcatcaagttgcaccgtggtctggtgcgggagatt
gacttgcggcaagagaaccagctgtttgtccgcagtatgctcggtgtttgtgccgactcg
gcggtgcaggtggttgcggtcggggtagaaaatcagaatgaatggcaggtattaaagcag
ttgggcgtcaagggcggccagggacgttattttgccgcagagttgtcactggaaaagccg
gaaagtccgcgtaaacaaaaatag
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