Photobacterium ganghwense: FH974_04085
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Entry
FH974_04085 CDS
T07175
Symbol
xthA
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FH974_04085 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgh03400
]
FH974_04085 (xthA)
Enzymes [BR:
pgh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
FH974_04085 (xthA)
DNA repair and recombination proteins [BR:
pgh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
FH974_04085 (xthA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
YozE_SAM_like
DUF3014
Motif
Other DBs
NCBI-ProteinID:
QSV14793
LinkDB
All DBs
Position
1:complement(818532..819338)
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AA seq
268 aa
AA seq
DB search
MKVISFNINGLRARLHQLQAVIDKHQPDIIGLQEIKVHDEAFPLEDIEAMGYQVYFHGQK
AHYGVAMLCKQTPLEVKKGFPTDDDEAQRRMIMATFAREDGSKVTVLNGYFPQGDNISHE
TKFPAKEKFYADLMTYLNTHHSNDEELIVMGDINISPIDLDIGIGPANAKRWLKTGKCSF
QPIEREWLSTLMNWGLVDTFRQQYPDVDDKFSWFDYRSRGFDDNRGLRIDVILATPALAQ
RCIDSGIDYELRGIDKPSDHAPIWTTFN
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtcatttccttcaatatcaatggccttcgcgcccgccttcaccagcttcaggcc
gtgatcgacaagcaccagccggacattatcggcctgcaggaaattaaagtgcacgatgaa
gcgttcccgctcgaagacattgaagcgatgggctaccaggtttatttccacggccagaaa
gcccactacggcgtggccatgctgtgtaaacagactccgctggaagtgaaaaaaggcttc
ccaacggacgatgatgaagcccagcgtcgaatgatcatggccacttttgcccgtgaagac
ggcagcaaagtgactgtcctgaacggctacttccctcagggcgataacatcagccatgaa
accaaattcccggccaaagagaagttctacgccgatctgatgacttacctgaacacgcat
cacagcaacgatgaagagctgattgtgatgggtgacatcaacatcagcccgattgatctc
gatattggcatcggcccggccaacgccaaacgctggctgaaaaccggtaaatgttcattc
cagccaatcgagcgtgaatggctgagcaccctgatgaattggggactggtcgatacattc
cgtcagcagtacccggacgtggacgacaagttctcgtggttcgattaccgctctcgtggt
tttgatgacaaccgcggcctgcgtatcgacgtgattctggccacacctgcactggcgcaa
cgctgtattgacagcggtatcgactatgagctgcgcggcattgacaagccatccgatcac
gcgccaatctggacgacgtttaactaa
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