Photobacterium ganghwense: FH974_05750
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Entry
FH974_05750 CDS
T07175
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH974_05750 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgh03019
]
FH974_05750 (rne)
03009 Ribosome biogenesis [BR:
pgh03009
]
FH974_05750 (rne)
Enzymes [BR:
pgh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FH974_05750 (rne)
Messenger RNA biogenesis [BR:
pgh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FH974_05750 (rne)
Ribosome biogenesis [BR:
pgh03009
]
Prokaryotic type
rRNA processing factors
FH974_05750 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QSV15566
LinkDB
All DBs
Position
1:complement(1195110..1198445)
Genome browser
AA seq
1111 aa
AA seq
DB search
MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE
RHGFLPLKEIARDYFPADYTYQGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEDLEYD
LNYLLNHWDRVKDAADSAPAPFLIHQESNVIARAIRDYLRRDIGEIVIDSKKIYDRAREH
IQQVRPDFMSRVKLYENSDTPLFNHYQIENQIESAFQREVRLPSGGSIVIDPTEALTSID
INSARATKGGDIEETALQTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRL
REAVRMDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHVCPRCSGTGVIRDSESLSLSI
LRLIEEEALKDNTSQVLAIVPVAIASYLLNEKRRSVQYIEKSHDVRVIIVPNADMETPHF
EVIRVRTGDEHETLSYNLPRAIEALREAESNESPQERLTVKKREEPVLQGFSAPQPKPEA
KAKPQAAPVASAPSETKPGIFSRLITAIANFFSPATEAKQEEKQDNGKRNRRDRRDNRRP
DNRRNERQEGRRQPKEGTRRNRPERQEADNKQVAEQREQRMSRRRNEKAKDKPEQQQPQA
SDKQAAPQRKEKEQKRQSRREDIQAQKQRRTEEKAPKAAKPAKAEKPVVEEKPEQEKAAK
VKQRRQRRDLRKKVRLTDDAEQTQELMLDAVQDAKDASPLQAMGTEMAKMAKSEEIVEEA
AEEAIEQDNGGQEGNGQRRNRRSPRHLRASGQRRRRIRDTRPEKDEDVEGIVTEAVGHAV
EEASDVLNDIENVISVVEKPKAVPRLHSGVASPEMAMGKVWPSASKEPVVALDEEAVVAE
NVAVTEATIAQETVAVTEASAVPALRSGVASPEMAMGKVFPLRSEVTAQAQPTEAPVAAE
PARQEAEVTTVEVVESAATEATNVAKDVTVAEEPVNAETTTADAEVAEAVAAAQAAMMGM
TMPMDAEADAVAPVAEAPVVVAAVKEQVTANTPRGNHAVSPMTKAPAPSIVAEPSIVAIA
PMREPRVLGRQGGSQGASNRATSPMSKPTAE
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgttgatcaacgcaactcaaaaggaagagttgcgcgtcgcattagttgatgggcagaag
ctcttcgatttggatatcgaaagccctggccacgaatctaaaaaagcaaatatctacaaa
ggacgcatcacacgtatcgaaccaagcctggaagcagcgttcgttgactatggtgcagaa
cgtcacggtttccttcctcttaaagaaatcgcccgcgattacttccctgctgattacact
taccaaggccgtcctaacattaaggaagtcctgaaggaaggtcaggaagttatcgttcag
gtagacaaagaagagcgaggcaacaaaggcgccgcgttaaccacgtttatctctctggct
ggtagctatctggttctaatgccgaacaacccgcgtgcaggtggtatttcccgccgcatc
gagggtgacgagcgtacccagctgaaagctgcactgagcacactggaactgccgcaaggc
atgggccttatcgtgcgcacagccggcgtgggtaaatcagcagaagatctggaatacgat
ctgaactacctgctgaaccactgggatcgcgtaaaagacgcagcagactcagcaccagca
ccgttccttatccatcaggaaagtaacgttatcgctcgtgctattcgtgactacctgcgc
cgtgacatcggtgaaatcgtcattgacagcaaaaagatctacgaccgtgcccgcgaacac
attcagcaggtacgtccggacttcatgtctcgcgtaaaactgtatgaaaacagcgataca
ccactgttcaatcattaccagattgagaatcagatcgaatcagccttccagcgtgaggtt
cgtctgccatcaggtggttctatcgttatcgacccaaccgaagctctgacctctattgat
atcaactccgcccgtgcaactaagggtggcgatattgaagaaaccgctctgcagactaac
ctggaagcggccgatgaaatcgctcgccagctgcgcctgcgtgacttgggtggtctggtg
gtcatcgacttcatcgatatgacaccagtgcgtcaccaacgtgaagtagaaaaccgtctg
cgcgaagccgtccgtatggaccgtgcccgtgttcagattggccgcatctcacgttttggt
ctgctggaaatgtctcgccagcgcctgagcccgtctctggcagaagcgagccatcacgtt
tgtcctcgttgtagcggtacgggtgttatccgtgacagtgaatcactgtcgctgtccatc
ctgcgtctgatcgaagaagaagccctgaaggataacacctctcaggtactggcgattgtg
ccagtggctattgcttcttacctgcttaacgaaaaacgccgttctgttcagtacattgaa
aaatcgcacgatgtgcgcgtgatcatcgtaccgaatgccgatatggaaacgccgcacttt
gaagtgattcgtgtccgtaccggtgatgagcatgaaacactgtcttacaacctgcctcgt
gcgattgaagcattgcgtgaagccgagtcgaacgaatcgcctcaagagcgcctgaccgtg
aagaagcgtgaagaacctgttctgcaaggtttcagcgcgccgcaaccaaagccggaagcc
aaagcgaaaccgcaggcggctcctgttgcaagcgcgccaagtgaaaccaagccaggtatt
ttcagccgcctgatcaccgcgattgctaacttcttctcgcctgccactgaggcaaagcag
gaagagaaacaagacaacggtaagcgtaaccgccgtgaccgtcgtgacaaccgtcgtccg
gacaaccgtcgtaacgagcgtcaggaaggccgtcgtcagccgaaagaaggcactcgccgt
aaccgtcctgaacgtcaggaagcggacaacaagcaagttgctgagcagcgtgaacagcgt
atgtctcgccgtcgtaacgagaaggcgaaagacaaacctgaacaacagcaaccacaggct
agcgataagcaagcagctccgcagcgtaaagagaaagagcaaaaacgtcagtcacgccgt
gaagacattcaagctcagaaacagcgccgcactgaagagaaagcaccaaaggctgcgaaa
cctgccaaagctgaaaaacctgttgtggaagagaagcctgagcaggaaaaagccgctaag
gtgaaacaacgtcgtcagcgccgtgacctgcgtaagaaagtgcgtcttactgatgatgcc
gagcagacacaagagctgatgctggatgccgtacaggacgcgaaagatgcttcgccactg
caagcaatgggcacagaaatggcaaaaatggccaagtctgaagagattgttgaagaagca
gcggaagaagctatcgaacaggacaacggtggtcaggaaggtaacggtcagcgccgtaac
cgtcgctcgccgcgtcatcttcgtgcaagcggccaacgccgtcgtcgtatccgtgacacc
cgtccggaaaaagatgaagacgttgaaggcatcgtaacggaagctgtgggccatgcggtt
gaagaagccagcgatgttctgaacgatatcgaaaacgtgatttctgttgttgagaaacca
aaggcggttcctcgtctgcacagcggcgtggcttcaccagaaatggcaatgggtaaagta
tggccatctgcgtctaaagagccggttgtcgctctggatgaagaagctgtagtagcagaa
aacgtagcagttacagaagcaacgattgcacaagaaacggttgccgtgactgaagcatcg
gctgtaccggcactgcgtagcggtgtagcgtctccagagatggcaatgggtaaagtcttc
ccactgcgctcagaggtgacggctcaagcgcaaccaaccgaagcgcctgtagcagccgag
cctgcccgccaggaagccgaggtgactaccgttgaggttgttgaatcagctgcaactgag
gcgactaacgtggctaaagacgttacggtagccgaagagccagttaacgctgaaacaacc
acggcggatgctgaggttgctgaagccgttgctgctgcacaagccgctatgatgggtatg
acaatgcctatggatgctgaagcagatgcagtcgcaccggtagctgaagcacctgttgtt
gtggcagcagtgaaagagcaagtgacggcgaatacacctcgcggtaaccatgctgtttct
ccgatgaccaaagcaccagcaccatcaatcgtagcggaaccaagcatcgtggccatcgca
ccaatgcgtgaacctcgtgtacttggccgtcaaggtggcagccagggagcaagcaaccgt
gcaacatcgccaatgagcaaaccgactgcagaataa
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