Photobacterium ganghwense: FH974_07415
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Entry
FH974_07415 CDS
T07175
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pgh
Photobacterium ganghwense
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgh03019
]
FH974_07415 (hrpA)
Enzymes [BR:
pgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FH974_07415 (hrpA)
Messenger RNA biogenesis [BR:
pgh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FH974_07415 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
ABC_tran
AAA_19
T2SSE
nSTAND3
ResIII
NACHT
TsaE
PhoH
SLFN-g3_helicase
AAA_11
NTPase_1
Zeta_toxin
AAA_23
Peptidase_S21
Motif
Other DBs
NCBI-ProteinID:
QSV15386
LinkDB
All DBs
Position
1:1591396..1595310
Genome browser
AA seq
1304 aa
AA seq
DB search
MTQSTTSQKDVLNNENTLKAAINDCMIRDRFRLLKRVQGAAKIKNEQARHAVFDEIAMDI
AKSMQVAQLRAAQRPTIRYPEQLPVSQKKDDIAEAIKHNQVVIVAGETGSGKTTQLPKIC
MELGLGTKGMIGHTQPRRLAARSVASRIAEELECELGSYVGYKVRFNDQVSDRSQIKLMT
DGILLAEIQNDRFLNQYDTIIIDEAHERSLNIDFIMGYLRELLPKRPDLKVIITSATIDP
ERFSKHFNNAPIIEVSGRTYPVEVRYRPISEESEDNDRDQLQAIFDAVDELCEEGLGDIL
IFMNGEREIRDTAEALEKRKLRDTEILPLYARLSAGEQNRVFQSHTGRRIVLSTNVAETS
LTVPGIRYVIDPGTARISRYSYRTKVQRLPIERISQASANQRKGRCGRVAEGICIRLYSE
EDFLSRPEFTDPEILRTNLASVILQMTAIGLGDIQAFPFVEAPDNRNIQDGVRLLEELGA
INAQAKDPRKRLTAIGRQLARLPIDPRLARMVLEAPKQGALREVMIIASALSIQDPRERP
MEKQQASDEKHRRFYDKDSDFVTFINLWDYVQEQQKALSGNQFRRQCKKDYLNYLRVREW
QDIYFQVHQVVRELDLKMNSQEASYDGIHTALLSGMLSHIGLKDQEKNEYQGARNARFNI
FPGSGIFKKQPKWVMVAELVETSKLWGRIAAKIQPEWVEPLAEHLLKRSYSEPHWEKKPA
SVSAFEKVTLYGIPIIAKRKVNYGRIDPVLSRELFIRSALVEGDWETKHKFYQQNRKLLL
EVEELEHKSRRRDILIDDDAMFEFYDQRIDHTVVSGRHFDTWWKKASKDNPELLNFEREM
LFKSDASHVTDLDYPNFWHQGNLKLKLSYQFEPGEDSDGVTVHVPLPILNQVEMEGFDWQ
IPGLRQELVVALIKSLPKPVRRNFVPAPNYADAFLARVDAMAMPLLDALEKELKRMTGVT
VLREDWNLEQVPDHLKITFRVVDHRNRKLRESKDLYSLKDGLKEKVQETLSKVADDDIEQ
EGLHTWSFGKLPECYQQKRGGFEVKAYPALVDNKDSVGIKLFETEEEQRTAMQQGQRRLI
LLNVPSPIKYLHDNLPNKSKLGLYFNPYGRVLDLIDDCIACGIDKLIEEKGGLVWEPEAF
EALKEHVRAELGDTVVEIAKQVESILTTAFNINKRLKGRVDLTMAFALSDIKAQIEGLIF
KGFATECGWKRLPDILRYMKAIERRMEKLPIDPNKDRMHIMKIESVVSDYKELLNKIPKG
QPVPEKVKEIRWMIEELRVSFFAQQLGTPYPVSDKRVRNAINEC
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
ttgactcagtcaaccacttctcagaaagacgttttgaataacgaaaatacgctaaaagct
gctatcaacgactgcatgatacgcgaccgtttccggttgctgaaacgggtgcagggcgca
gcaaagattaagaacgaacaagcccgccacgcggtgtttgacgaaatcgcgatggatatt
gccaagtccatgcaagtggctcagctgcgtgcggcgcaacgcccgacgattcgctatccg
gaacagctgcctgtcagccagaaaaaagacgacatcgccgaagccattaagcacaaccag
gtggtaattgtcgccggtgaaaccggttcgggtaaaacgacccagctgccgaaaatctgt
atggagctggggctgggcaccaaggggatgattggtcacacccagccacgccgactggct
gcccgttcggttgcgagccgtattgcagaagagctggaatgtgaactgggctcttacgtg
ggttacaaagttcgatttaacgatcaggtttccgaccgcagccagattaagctgatgacg
gacggtattctgctggctgaaattcagaatgatcgtttcctaaaccagtatgacaccatc
attatcgatgaggcgcacgagcgtagcctgaatattgatttcatcatgggttacttgcgc
gagctgttgccgaagcgcccggacctgaaagtcattattacctctgcgaccattgatccg
gaacgcttctctaagcacttcaacaacgcaccgattatcgaagtgtcaggccggacgtat
ccggtggaagtgcgttatcgtccgatcagtgaagagagtgaagataacgaccgcgatcag
ctgcaagccatttttgatgccgtcgatgaactgtgtgaggaagggctgggtgacatcctg
atcttcatgaacggtgaacgtgagattcgtgataccgcggaagcactggaaaaacgtaag
ctgcgggatactgaaattctgccgctgtatgcccgtttgtctgcgggtgagcaaaaccgg
gtgttccagtcgcacaccggccgacgtattgttctgtcgaccaacgtggctgaaacctcg
ctgaccgtaccgggtatccgatatgtaattgatccggggacagcccgaatcagtcgctac
agttaccgtactaaagtacagcgcctgccgattgaacgcatttcacaggcgagtgccaac
cagcgtaaaggccgttgtggccgtgtggctgaaggtatctgtatccgcctgtattccgaa
gaagacttcctgtcgcgtccggaatttaccgatccggaaattctgcgtaccaacctggct
tccgttattcttcagatgactgcaatcgggctgggggatattcaggcatttccgtttgtt
gaagcgccggataaccgcaatattcaggacggtgttcgcctgttggaagagctgggggcg
atcaatgcgcaggccaaagatccgcgcaaacgtctgaccgcaatcggccgtcagctggcc
cgtttgccgattgacccgcgtctggcccgaatggtacttgaagcaccgaagcagggagcg
ctgcgtgaggtgatgatcattgcgtcggcactgtcgattcaggatccacgtgaacgcccg
atggaaaaacagcaggcatcggatgagaagcatcgtcgtttctacgacaaagactccgat
tttgtgaccttcattaacctgtgggactacgtacaggagcagcagaaagcgctgtccggc
aaccagttccgccgccagtgtaagaaagattacctgaactacttgcgggttcgtgagtgg
caggacatctacttccaggtacatcaggttgtccgcgagctggacctgaagatgaactca
caggaagccagttatgacggtattcatactgcattactgtccgggatgctgtctcatatt
ggtctgaaagatcaggaaaagaacgagtatcagggagcgcgtaacgcacgctttaacatt
ttcccgggctccggcattttcaagaaacagccgaaatgggtcatggtcgcggagctggtt
gaaacctcaaagctatggggccgcattgccgccaagattcagcctgaatgggtagagccg
ctggccgagcacttgctcaaacgcagctacagtgaacctcactgggagaaaaaaccggct
tcggtatccgcttttgagaaggtgaccctgtacggtattcccatcatcgccaagcgtaag
gtgaactacggtcggattgatcctgtgttgtcccgtgagctgtttatccgctcggcactg
gtcgaaggtgactgggaaacgaagcacaagttctatcagcagaaccgcaaattgttgctg
gaagtggaagagctggagcataaatcccgtcgccgtgacattctgatcgacgatgatgcg
atgttcgagttttatgaccagcgcattgaccacactgtggtttccggtcgtcactttgac
acctggtggaaaaaggcatcgaaagacaatcctgaactgctgaactttgaacgtgaaatg
ctgttcaagagcgatgccagccatgtaacggatctggactacccgaacttctggcatcag
gggaacctcaagcttaagttgagttaccagtttgaaccgggtgaagatagtgacggtgtc
acggttcacgtcccgctgccgattctgaaccaagtggaaatggaaggtttcgactggcag
atcccgggtctgcgtcaggagctggtggtggctctgattaagtctttacccaaaccggtg
cgccgcaattttgtgccggcaccaaactatgccgatgctttcctggcccgtgttgatgca
atggcaatgccgctgctggatgcgctggagaaagagcttaaacgcatgactggcgtgacg
gttttgcgtgaagactggaatcttgaacaggtgccggatcaccttaagatcactttccgt
gtggtggatcatcgcaaccgcaagctgcgtgaaagcaaggatctttacagcctgaaagat
ggcctgaaagagaaagtgcaggaaacgctgtctaaagtggcggatgacgacatcgagcag
gaaggtctgcacacctggagttttggcaaactgcctgagtgttatcaacagaaacgtggc
ggctttgaagtaaaagcctacccggcgctggtggataacaaagattccgtcggaatcaaa
ctgtttgagacagaagaagagcagcgcacagccatgcaacagggtcagcgtcgtttgatt
ctgctcaatgtgccgtcgccgatcaaatatctgcacgacaacctgccgaacaaatcaaaa
cttggcttgtactttaacccgtatggtcgggtgttggatctgatcgacgattgtatcgcc
tgtgggatcgacaagctgattgaagagaaaggcggcctggtatgggagccggaagcgttt
gaagcactgaaagagcatgtccgcgctgagctgggtgataccgtcgtagagattgccaag
caggtggaatctatcctgacaacggcattcaacatcaacaagcgtctgaaagggcgggtt
gatttgaccatggcgtttgcgttgtctgatattaaagcgcagattgaagggctgatcttc
aaaggctttgctacggaatgtggctggaagcgtctgccggatattctgcgttacatgaag
gcgattgagcgtcggatggaaaagctgccgattgacccgaacaaagaccgcatgcatatc
atgaagattgaatcggttgtgtcggactacaaagagctgctgaacaagattccgaaaggt
cagcctgttccggagaaagtgaaagagatccgctggatgattgaagagctgcgtgtcagc
ttctttgcgcagcagctggggacgccatatccggtatcagataagcgagtgcgtaacgcc
attaacgaatgttaa
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