Photobacterium ganghwense: FH974_08140
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Entry
FH974_08140 CDS
T07175
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
FH974_08140 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pgh03400
]
FH974_08140 (sbcB)
Enzymes [BR:
pgh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
FH974_08140 (sbcB)
DNA repair and recombination proteins [BR:
pgh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
FH974_08140 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FH974_08140 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FH974_08140 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QSV12762
LinkDB
All DBs
Position
1:1759931..1761355
Genome browser
AA seq
474 aa
AA seq
DB search
MSNSNNQPTLFWLDYETFGASPANDRPCQFAGVRTDMDLNVIGEPLVIYCKPPVDYLPSP
EACLITGITPQEAHQKGLSEPEFIARIHDELSKPNTCVIGYNNIRFDDEVTRYTLYRNFF
DPYAWSWQNGNSRWDMLDVMRTCYALRPEGITWPTNEDGFPSFKLEHLSVANGIEHANAH
DAMADVYATIELAKLVKQHQPKLFSYFFDLRNKRKLQNLIDIVEMTPLMHVSGMFGVECG
NTTWIVPMAWHPDNKNAVIAVNLAMDPAPLLELSADELRERLYTKRADLGPDELPVPLKL
VHINKCPILAPAKTLRAEDAARIGIDREACLKNLQLLKSHPEVREKLLAIYSEDREFTPS
DNVDAQLYDGFFSDADRSTLEIIRKTPSEELGKLEINVSDKRIKPLLFRYRARHFPMTLD
YKEQQQWKHYCQDFFEAKLPGYMQNLEAVAMEHQTSERDMKILKAVYDYVESLV
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacagcaataaccagccaacattgttttggctcgattatgaaaccttcggtgcc
agcccggcgaatgaccgtccgtgtcagtttgcgggtgtgcgtaccgatatggatctgaat
gtgattggtgagccgctggtgatttattgtaaaccacccgtggattacctgccctctcct
gaagcctgtctgatcaccggtattactccgcaggaagcccaccagaaagggctgtccgag
ccggagtttattgcccgcattcatgatgagctgtctaagccgaatacctgtgtgattggc
tataacaacattcgtttcgatgatgaagttacgcgctataccctgtatcgcaacttcttc
gacccatatgcctggagctggcagaacggtaactcgcgttgggacatgctggatgtgatg
cgcacctgttatgcgctgcgtccggaaggtattacctggccgaccaatgaagatggtttt
cctagcttcaagctggagcacctgtcggtcgccaacggtattgaacacgccaacgcgcac
gatgcgatggctgatgtgtatgcgaccattgagctggcgaagctggtgaaacagcatcag
ccaaaactgttcagttatttctttgatctacgcaacaagcgtaaattacagaacctgatc
gatatcgtggaaatgacaccgctgatgcacgtttctggtatgtttggcgtggaatgcggc
aataccacctggattgtgccgatggcgtggcatccggataacaagaacgcggtaattgcg
gtcaatctggcaatggacccagcgccgctgctggagctgtctgccgatgagctgcgcgaa
cgtctgtacaccaagcgagcggacttagggccggatgagttgccagtgcctctcaagctg
gttcacattaataagtgtccgattcttgcaccggctaaaaccctgcgtgctgaagatgcg
gcgcgtatcggcattgaccgtgaagcctgtctgaaaaacctgcagctattgaagtctcac
ccggaagtgcgcgagaagctgctggctatctacagtgaagatcgtgagtttacgccgagc
gataatgtggatgcacagttatatgacggtttcttctctgatgcggatcgctccacactg
gaaatcatccgtaaaacgccttctgaagaactgggtaagcttgaaatcaatgtcagtgac
aagcgtatcaagccgctgttgttccgttaccgcgcccgtcacttcccgatgacactggat
tataaagaacagcagcaatggaaacattactgtcaggacttctttgaagccaagctgcct
ggttacatgcagaacctggaagctgtggcgatggaacaccaaaccagtgaacgggatatg
aagattctgaaagcagtgtatgactatgtagagtcactggtgtaa
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integrated database retrieval system
