Photobacterium ganghwense: FH974_08745
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Entry
FH974_08745 CDS
T07175
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH974_08745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgh03019
]
FH974_08745
Enzymes [BR:
pgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FH974_08745
Messenger RNA biogenesis [BR:
pgh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FH974_08745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_22
SNF2-rel_dom
Helicase_C_2
AAA_19
NAT10_TcmA_helicase
HEM4
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QSV12868
LinkDB
All DBs
Position
1:complement(1901311..1902573)
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AA seq
420 aa
AA seq
DB search
MPDSNMPFQALGLNSQLISNIHALGFQQPTPVQQQAIPEVLAGHDVLAGAQTGTGKTAAF
GLPLIQQLMAEPARSYGAKTVKALILTPTRELAQQVFESLSGYAKETDLRIVTAYGGTSI
KMQVKALEQGVDILVATPGRLLDHAYVGTVDLSQISMLVLDEADRMLDMGFIDDIKRIMK
RIKAERQTLFFSATFGPKVKELAYRILKDPKEIEVSPANSTAVTVEQMVYPVDKHRKREL
LSYLIGSGNWQQVLIFTKTKQGSDELAKELGKDGIKAVSINGDKSQGARQRALEQFKEGK
VRALVATDVAARGLDIEQLEHVVNFDMPFKAEDYVHRIGRTGRAGQTGKAISLMSLDEEW
ALRAIEELLDTRLPQQWLEGYEPDPTAEPLENLRRGRSSDKRRAKAKHQIHKNRGRRVSR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgccggattccaacatgcctttccaagctttagggcttaacagccaacttatctccaat
atccatgctctgggttttcaacagccgacaccggttcagcaacaggctattcctgaagtg
cttgccgggcatgatgtgttggcgggcgcgcagaccggaaccggcaaaacggcagcgttt
ggcttgccgttgatccagcagctgatggcggaaccggcacgttcttatggcgctaaaacc
gtgaaggcgctgattttgacgccgacccgtgaactggcgcagcaggtttttgaaagcctg
agcggttatgccaaagaaaccgatttacgcattgtcacggcttacggtggaaccagtatt
aagatgcaggtaaaagcattggaacagggcgtggatattctggtcgcaacgccgggacgc
ctgctggatcatgcctatgtcgggaccgttgatctcagccagatcagcatgctggtgctg
gacgaagcggatcgcatgctggatatgggtttcattgacgatatcaaacggatcatgaag
cgcatcaaagctgagcgtcagacactgtttttttctgcgacgtttggcccgaaagtgaaa
gagctggcgtaccgtatcctcaaggatccgaaagaaattgaagtatctccggcaaacagt
actgccgtcacggtagaacaaatggtctacccggtagataagcatcgtaagcgcgagttg
ctctcttatctgatcggttccggcaactggcagcaggtactgattttcacgaaaaccaaa
cagggctccgatgaactggccaaagagctgggtaaagatgggatcaaagcggtttctatt
aacggggataaaagtcagggcgctcgtcaacgtgcgctggagcagttcaaagaaggtaaa
gtgcgtgcattagtggcgacggatgtggccgctcgagggctggacatcgaacagctagag
catgttgtgaacttcgatatgccgtttaaagcagaagactatgtgcaccgtatcggtcgt
accgggcgtgcaggccagaccggcaaggcaatttcgttgatgagtcttgatgaagaatgg
gcgctgcgagccattgaagaactgttggatacccgcttgccgcagcaatggctggaaggt
tatgagccggatccaacggcagaaccactggaaaatctccgtcgaggtcgttcaagcgat
aagcgccgcgccaaagctaagcatcagattcataagaatcgtgggcgtcgtgtcagccgc
taa
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