Photobacterium ganghwense: FH974_12925
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Entry
FH974_12925 CDS
T07175
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH974_12925 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgh03019
]
FH974_12925 (pnp)
03016 Transfer RNA biogenesis [BR:
pgh03016
]
FH974_12925 (pnp)
Enzymes [BR:
pgh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FH974_12925 (pnp)
Messenger RNA biogenesis [BR:
pgh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FH974_12925 (pnp)
Transfer RNA biogenesis [BR:
pgh03016
]
Prokaryotic type
tRNA degradation factors
FH974_12925 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
S1_2
S1_RRP5
KH_2
KH-I_KHDC4-BBP
aRib
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
QSV13627
LinkDB
All DBs
Position
1:complement(2849265..2851388)
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AA seq
707 aa
AA seq
DB search
MNPIVKTFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKEAVEGQDFFPLTV
NYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDAFKNEVQVIATVVSVN
PDVQPDIITMIATSAALAISGIPFNGPIGAARVGYINDQLVLNPSNTELAQSRLDLVVAG
TDSAVLMVESEADRLSEEQMLQAVVFGHDQQQVVINAIKEFAAEVNTPAWNWVAPVENTE
LKTRVAELAEARLTDAYQITEKMARYEQVGQIKGDVVEALLAQDETLDEREIRDMLGSLE
KKVVRSRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQRD
AQIIDELTGERKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIAAVMPSVDEF
PYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGEDFVVLSDI
LGDEDHLGDMDFKVAGTADGVTALQMDIKIEGITKEIMQIALNQARGARTHILSVMDQAI
NAPRDDISEFAPRIHTMKINPEKIKDVIGKGGAVIRALTEETGTTIEIEDDGTVKIAATE
GTAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGSKEGLVHISQISQERIEK
VADHLELGQEVKVKVLEIDRQGRIRLSMKEAQEDQNAAPAGEQQPEA
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctatcgtaaagactttccagtacggtaaccacacagttactctagaaactggc
gttatggcacgtcaggcgactgccgctgtgatggcgagcatggacgatacttctgtattc
gtcagcgttgtgggcaagaaagaagctgttgaaggccaggacttcttccctctgacagta
aactaccaagagcgtacttacgctgcgggtaaaatccctggtggtttcttcaaacgcgaa
ggccgtccatcagaaggcgaaacactgactgctcgtctgattgaccgtccaatccgtccg
ctattcccagatgcattcaaaaacgaagttcaggttattgcaactgtggtttctgtaaac
ccagatgtacaaccagacatcattactatgatcgcaacgtctgcggcgctggcaatctct
ggtattccgtttaacggtccaatcggtgctgctcgtgtgggttacatcaacgaccaactg
gttctgaacccaagcaacactgaactagcacaaagccgtctggacctggttgttgctggt
actgacagcgcagttctgatggttgaatcagaagctgaccgcctgagtgaagagcaaatg
ctgcaagcggttgtgttcggtcacgaccaacaacaagttgtgatcaacgcgatcaaagag
ttcgcagctgaagtgaacacgcctgcgtggaactgggttgcaccggttgaaaacactgag
ctgaaaacccgtgttgctgaactggctgaagcccgtctgactgacgcttaccagatcact
gagaaaatggcgcgttacgagcaagttggccagatcaagggcgacgtggttgaagcgctg
ctggcgcaggacgaaactctggacgagcgtgaaatccgcgacatgctgggttctctggag
aagaaagtggtacgtagccgcattatcgctggccacccacgtatcgacggtcgtgaaaaa
gacatggttcgtgcactggacgtacgtactggcgttctgccacgtactcacggttcatct
ctgtttacccgtggtgaaacacaggcgctggtaacggcaactctgggtacacagcgtgat
gcgcaaatcatcgacgagctgactggtgagcgtaaagatcacttcctgctgcactacaac
ttccctccatactgtgtgggtgagactggctttgtaggttctccgaagcgtcgtgaaatc
ggccacggtaaactggctaagcgtggtattgccgcagtaatgccttctgttgacgagttc
ccgtacacagtacgtgttgtgtctgagatcactgaatcaaacggttcgtcttcaatggca
tcagtatgtggtacgtctctggcgctgatggacgcgggtgtgccaattaaagcctctgta
gccggtatcgcaatgggtctggttaaagaaggcgaagactttgtggttctgtctgacatt
ctgggtgacgaagatcacctgggtgacatggactttaaagtggcgggtaccgctgacggc
gtaacagccctgcagatggatatcaagatcgaaggtatcactaaagaaatcatgcaaatc
gccctgaatcaggcgagaggtgcgcgtacgcacatcctgagcgtgatggaccaggcgatc
aacgcgccacgtgatgatatctctgagttcgcaccacgtatccacaccatgaagatcaac
cctgagaagatcaaagatgtgatcggtaagggtggtgctgtgattcgtgcgctgactgaa
gaaactggtactacgattgaaatcgaagacgacggtactgtgaagatcgcagcgaccgaa
ggtactgctgcgaaagaagctatccgtcgtatcgaagaaatcactgctgatgttgaagtt
ggccgcatctataccggtaaggtaatgcgtattgttgacttcggtgcattcgtttctgtg
attggttctaaagaaggtctggttcacatttctcaaatctctcaggagcgcattgagaaa
gtggcagatcacctggaactgggtcaggaagtgaaggtgaaagttctggaaatcgaccgt
cagggtcgtatccgtctgagcatgaaagaagctcaggaagaccagaatgctgcacctgct
ggtgaacagcagccagaagcctaa
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