Photobacterium ganghwense: FH974_13770
Help
Entry
FH974_13770 CDS
T07175
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pgh
Photobacterium ganghwense
Pathway
pgh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FH974_13770 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgh03021
]
FH974_13770 (rpoD)
Transcription machinery [BR:
pgh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FH974_13770 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QSV13777
LinkDB
All DBs
Position
1:3054939..3056789
Genome browser
AA seq
616 aa
AA seq
DB search
MEQNPQSQLKLLVAKGKEQGYLTYAEVNDHLPEDIVDSDQVEDIIQMINDMGIKVVETAP
DADDLMMTEDNADEDAIEAAAQALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIA
KRIEEGINQVQCSVAEYPTAIAHLLEQFDKVEADELRLTDIISGFVDPNEEETTAPTATH
IGSELSEADLEDEDKDLEDDDDDDDSSDTEEDSGIDPEVAREKFNELRLAYEKMAVAIDS
KGRNDAETIQAIDELSEIFKQFRLIPKQFDKLVSSLRDAMDRVRTNERLIMRMCVDNSKM
PKKTFVNLFAGNEASTAWIDEALNSGKPYAERLKNYEEELRRCATKLRMLEEETGLSVER
IKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLQLPMDAATA
TNLRAATNEVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSDVLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaatccgcagtcacagctgaagttacttgttgctaagggcaaggaacaaggc
tatctgacctacgccgaagtaaatgaccaccttccggaagacattgtcgattctgatcag
gtggaagacatcattcagatgattaatgacatgggtattaaggtagttgaaactgcccct
gatgccgatgatctgatgatgacagaagacaatgcggacgaagatgcgattgaagccgcg
gctcaggccctttccagcgtggaaagcgaaattggccgtacaaccgaccctgtgcgtatg
tacatgcgcgaaatgggtactgttgagctgctgacgcgcgaaggcgaaatcgacatcgca
aaacgtattgaagagggtatcaaccaggtacagtgctccgtagccgaatacccgaccgca
attgctcacctgcttgagcagtttgataaagtcgaagccgacgaactacgcctgactgat
attatctcaggcttcgttgatcctaacgaagaagaaacaaccgctccaacagcaacgcac
atcggttctgaactgagtgaagcagatcttgaagacgaagacaaagatcttgaagacgat
gacgacgacgatgacagctctgatactgaggaagactcaggtatcgaccctgaagtagcg
cgtgagaagtttaatgagctgcgtcttgcttatgaaaaaatggccgttgccattgattct
aaaggccgtaacgacgcggaaactattcaggctatcgatgaactgtctgaaatcttcaag
cagttccgtctgatcccgaaacagttcgacaagctggtcagctcgctgcgtgatgccatg
gatcgagtgcgcactaacgagcgcctgatcatgcgtatgtgtgtcgacaacagtaaaatg
ccgaagaaaactttcgtaaacctgtttgccggcaacgaagcatcaaccgcgtggatcgat
gaagcgctgaattcaggcaagccttacgctgagcgtctgaagaactacgaagaagaactg
cgtcgttgtgcgaccaaactgcgcatgctggaagaagaaaccggcctgagcgttgagcgt
atcaaagacatcagccgtcgtatgtccatcggtgaagcgaaagcgcgccgtgcgaagaaa
gaaatggttgaagccaacctgcgtctggttatctcgatcgcgaaaaagtacaccaaccgt
ggtctgcaattcctggatctgattcaggaaggtaacatcggtctgatgaaagcggttgat
aagttcgaataccgtcgtggttacaagttctcgacttacgcaacatggtggatccgtcag
gcaatcacccgctctatcgccgaccaggcacgtacgatccgtattccggttcacatgatt
gaaaccatcaacaaactgaaccgtatctcacgtcagatgcttcaggagatgggtcgtgag
ccactgccggaagagctggcagagcgcatgcagatgccggaagacaagatccgtaaagtg
ctgaagatcgcgaaagagccgatctcgatggaaaccccaatcggtgatgatgaagattca
catctgggtgatttcattgaagataccacgctgcagctaccaatggatgcagcaaccgcg
accaacctgcgcgctgcaactaacgaagtgctggctggtctgacgccgcgtgaagcgaaa
gtgctgcgtatgcgttttggtatcgacatgaacaccgatcacaccctggaagaggtcggt
aagcagtttgacgttacccgtgagcgtatccgtcagattgaagccaaagctctgcgtaag
ctgcgccacccaagccgttcagacgtgctgcgcagcttcctggacgagtaa
DBGET
integrated database retrieval system
