Photobacterium ganghwense: FH974_14950
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Entry
FH974_14950 CDS
T07175
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FH974_14950 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgh03021
]
FH974_14950 (rpoC)
03400 DNA repair and recombination proteins [BR:
pgh03400
]
FH974_14950 (rpoC)
Enzymes [BR:
pgh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FH974_14950 (rpoC)
Transcription machinery [BR:
pgh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FH974_14950 (rpoC)
DNA repair and recombination proteins [BR:
pgh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FH974_14950 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QSV13954
LinkDB
All DBs
Position
1:complement(3302373..3306590)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFESYVVIEPGMTNLERSQLLSEEQYLDALEEWGDEFDAKM
GAEAVQALLGNMDLNAEIELMREELDETNSETKRKKLTKRVKLVEAFLQSGNNPEWMILS
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINAKGEGMYLSGPAEAEKAYRTG
NAELHSRVKVRITQYLKDEQGNLTEDTQLVDTTVGRAMLWKIVPKGLPYSLVNTEALGKK
QISKLLNTCYRELGMKETVIFADQIMYTGFAYAALSGVSVGIDDMVVPEAKYTKIAEAEA
EVAEIQEQFQSGLVTAGERYNKVIDIWATANEQVAKAMMDNLSFDTVINRDGEEELQKSF
NSVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVITSDDCGTHGGITMMPLIEGGDVKEPLRDRV
LGRVVAEDVLKPGTEEVLAPRNTLLDEKWCDILEANSVDQVKVRSVVTCENDFGCCRNCY
GRDLARGHLVNQGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASAAAAENSIQVKNSGSLK
LQNAKFVTNNDGKLVITSRASELTVIDEFGRTKENYKLPYGSHLTKGDGAEVAAGEVVAN
WDPHTMPIITEVAGRVQFVDLIDGVTVSRQTDDLTGLSMITILDAAERTGAGKDMRPTIK
LVDENGDHVMIAGTEMPAQYFLPGKAIIQLEDGAMVGIGDTLARIPQASGGTKDITGGLP
RVADLFEARKPKEPAILAEITGTVSFGKETKGKRRLIITPAEGNAYEEMVPKWRQLNVFE
GEKVEKGDVIADGPESPHDILRLRGVYAVAEYIVNEVQEVYRLQGVKINDKHIETIIRQM
LRKVTILTAGESEFLPGEQVEYSRVNIANRKLIAEGKVPATFERDLLGITKASLATESFI
SAASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHQQRQRQRDSELEPV
APQVDAEQASQDLAALLNAGLSDEN
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttacttaagtttctgaaagcacaacacaagaccgaagaatttgatgcaatc
aaaatcggtcttgcttcaccagacatgatccgttcatggtctttcggtgaagtgaaaaaa
ccagaaaccatcaactaccgtacctttaagcctgagcgtgacggtcttttctgtgcacgt
atctttggcccggtaaaagactacgagtgtctttgtggtaaatacaagcgcctgaagcac
cgtggtgttatctgtgaaaaatgtggtgtagaagttactcagaccaaagtacgccgtgag
cgtatgggtcacattgagctggcttcccctgtagcccacatctggttcctgaagtcactg
ccatcccgtatcggtctgcttatggacatgccgctacgtgatatcgaacgtgtactttac
ttcgaatcttacgttgttatcgaaccaggcatgaccaaccttgagcgtagccagctgctg
agcgaagagcagtacctggatgcgctggaagagtggggcgacgagttcgacgcgaagatg
ggtgcagaagcggttcaggcactgctgggcaacatggacctgaatgccgaaatcgaactg
atgcgtgaagagctggatgaaaccaactctgaaaccaagcgtaagaaactgaccaagcgt
gtgaagctggtcgaagcattcctgcagtcaggcaacaaccctgagtggatgatcctgtct
gttctgccagttctgccaccggatctacgtccgctggtaccgctggacggtggccgtttc
gcgacctcggatctgaacgatctgtaccgtcgtgttatcaaccgtaacaaccgtctgaag
cgtctgttggatctggctgctcctgatatcatcgtacgtaacgaaaaacgtatgcttcag
gagtctgttgatgcactgcttgataacggtcgtcgtggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggcagacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctgggtaaacgtgtagactactcaggccgttcggttatcaccgtaggtccatac
ctgcgtctgcatcagtgtggtcttcctaagaagatggcactggagctgtttaagccattc
atctacggcaagctggaaactcgtggcctagcgacgacaatcaaagctgctaagaagatg
gtagagcgcgaagaagcggttgtttgggatatcctggacgaagtgattcgcgaacaccca
gttatgctgaaccgtgcaccaacactgcaccgtctgggtattcaggcatttgaaccagta
ctgatcgaaggtaaagcgatccagctgcacccactggtgtgtgcggcctataacgccgac
ttcgatggtgaccagatggcggtacacgtacctctgactctggaagcacagcttgaagct
cgtgcgctgatgatgtctaccaacaacatcctgtcgccagcgtctggtgatccaatcatc
gtaccttctcaggacgttgtactgggtctgtactacatgacgcgtgataagatcaacgcg
aagggtgaaggcatgtacctgtctggtccggctgaagctgaaaaagcttaccgtaccggc
aatgctgaactgcactcacgtgtaaaagtacgtattactcagtacctgaaagacgagcag
ggcaacctgactgaagatactcagctggttgatacgactgttggtcgtgcgatgctgtgg
aagatcgtaccaaaaggtctgccatacagcctggtgaatactgaagcgctgggtaagaag
cagatctctaaactgctgaacacctgttaccgtgaattgggcatgaaagagactgttatc
tttgctgaccaaatcatgtacacaggttttgcttacgctgctctgtctggtgtgtctgtt
ggtatcgacgacatggttgtaccagaagcgaaatacaccaagatcgcagaagcagaagca
gaagttgctgaaattcaggaacagttccagtctggtctggtaacagctggcgaacgttac
aacaaagttatcgatatctgggcaacagccaacgagcaggttgctaaggcgatgatggat
aacctgtctttcgacacagttatcaaccgtgacggcgaagaagaactgcagaaatcgttc
aacagcgtatacatgatggccgactcgggtgcgcgtggttctgccgctcagatccgtcag
ctggctggtatgcgtggtctgatggcgaagccggatggctcgatcatcgaaaccccaatc
acggcgaacttccgtgaaggtctgaacgtacttcagtactttatctcaacgcacggtgct
cgtaagggtctggcggatacggcactgaagacagcgaactccggttacctgactcgtcgt
ctggtagacgtagcgcaggatgtggtaatcacatctgacgactgtggtacacacggcggc
attactatgatgcctctgatcgaaggtggtgatgttaaagaaccactgcgcgatcgcgta
ctgggtcgtgttgttgcagaagacgtgctgaagccgggtactgaagaagtactggcaccg
cgtaacacactgcttgatgaaaaatggtgtgacatcctggaagccaactctgttgaccag
gtaaaagtacgttctgtagtaacttgtgagaacgacttcggttgttgtcgtaactgttac
ggtcgtgacctggctcgtggtcacctggttaaccagggtgaagcggttggtgttgtggca
gcacagtctatcggtgaaccaggtacacagctgacaatgcgtacgttccacatcggtggt
gcggcatcggcagcagcagcggaaaacagcattcaggttaagaacagcggttctttgaag
ctgcaaaacgcgaagttcgtaacgaacaacgatggcaagctggttattacttctcgtgca
tctgaactgaccgtaatcgatgagttcggccgtacgaaagagaactacaaactgccatac
ggttctcacctgactaaaggtgacggcgctgaagtggcggcgggtgaagtggttgccaac
tgggacccacacaccatgccaatcatcactgaagtggcgggtcgtgttcagttcgttgac
ctgatcgatggtgttacagtttctcgtcagactgatgatctgacaggtttgtctatgatc
actatcctggacgctgctgagcgtactggtgctggtaaagacatgcgtccgaccattaaa
ctggttgacgaaaacggtgatcacgtgatgatcgcgggtactgaaatgcctgcacaatac
ttcctgcctggtaaagcgattatccagctggaagacggtgcgatggtaggtatcggtgat
acgctggcacgtattcctcaggcatctggcggtacgaaagatatcaccggtggtctgcca
cgagttgctgacctgttcgaagcgcgtaagccaaaagaaccagcaatcctggctgaaatc
acaggtaccgtatcgttcggtaaagagacgaaaggtaagcgtcgtctgatcatcacacct
gcggaaggtaatgcgtacgaagagatggtgcctaagtggcgtcagctgaacgtgttcgaa
ggtgagaaggtcgagaaaggtgacgtaatcgccgatggtccagagtctccacacgatatc
ctgcgtctgcgtggtgtttacgcggtagcagaatacatcgtgaacgaggttcaggaagtt
taccgactacagggcgttaagattaacgataagcacatcgagactatcattcgtcagatg
ctgcgtaaggtaacgatcctgactgcaggtgagtctgagttcctacctggtgaacaggtt
gagtactctcgcgtgaacattgcaaaccgtaagctgattgcggaaggtaaagtacctgca
acgttcgaacgtgacctgctgggtatcacgaaagcgtctctggcaaccgagtcgttcatc
tctgcggcgtcgttccaggaaacaacccgcgttctgacagaagctgcggtttctggtaag
cgtgatgagctacgtggtctgaaagagaacgtaatcgttggtcgtctgatccctgctggt
accggtttcgcgtaccatcagcagcgccagcgtcagcgtgattctgagctggagccagta
gcacctcaggtagatgctgaacaagcctctcaagacctggcggcattgctgaatgctggt
ctgagcgacgaaaactaa
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integrated database retrieval system
