Photobacterium ganghwense: FH974_15380
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Entry
FH974_15380 CDS
T07175
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03030
DNA replication
pgh03410
Base excision repair
pgh03420
Nucleotide excision repair
pgh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FH974_15380 (polA)
03410 Base excision repair
FH974_15380 (polA)
03420 Nucleotide excision repair
FH974_15380 (polA)
03440 Homologous recombination
FH974_15380 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgh03032
]
FH974_15380 (polA)
03400 DNA repair and recombination proteins [BR:
pgh03400
]
FH974_15380 (polA)
Enzymes [BR:
pgh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FH974_15380 (polA)
DNA replication proteins [BR:
pgh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FH974_15380 (polA)
DNA repair and recombination proteins [BR:
pgh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
FH974_15380 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FH974_15380 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH
Prok-E2_E
HHH_2
Motif
Other DBs
NCBI-ProteinID:
QSV14009
LinkDB
All DBs
Position
1:complement(3392301..3395072)
Genome browser
AA seq
923 aa
AA seq
DB search
MATIPENPLILIDGSSYLYRAYHAAPNLTNSDGEPTGAVFGVVNMLRSLLRQFSTEHIAV
VFDAKGKTFRDDLYAEYKANRPPMPDDLRAQVEPLHAVIKAMGLPLIAVTGVEADDVIGT
LATQASKAGMPVLISTGDKDMAQLVDENVTLINTMTNVVMDPEGVVEKFGIGPELIIDYL
ALMGDKVDNIPGVPGVGEKTAKALLTGIGGLDALYQNLDVIPALGFRGSKTMAQKLLDNK
DAAYLSYELATIKLDVELDFAPHELVKGEPDTDELTRLFGKLQFRRWLAEMLDGSDGRIV
ADESAAQAAAPKKDVAPVIDRSGYEIVLDEATFEAWLTTLNNAEVVAFDTETDSLDYMVA
NLVGVSFAVEEGKAAYVPVAHDYLDAPQQLDRDWVLAKLKPLLEDPNKAKVGQNLKYDAS
VLARYDIEMQGIRFDTMLESYVYNSVIGRHDMDSLSLRYLEHKTISFEEIAGKGKKQLTF
NQIDLAEAGPYAAEDADITLRLHNLLIAKVHADDKLKSVFEDIEMPLVPVLSRMERTGVL
IDTKKLGTQSAEIAKRLDELEKDAYEVAEQEFNLSSPKQLQAILFEKMGLPVLKKTPSGT
PSTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTAT
GRLSSSDPNLQNIPVRNEEGRRIRQAFVAPEGYKILAVDYSQIELRIMAHLSGDQALLDA
FRHGKDIHAATAAEILGIALDEVSSEQRRRAKAINFGLIYGMSAFGLAKQLGMGRNEAQD
YMNVYFERYPGVLEYMESTRTQASEQGYVETLFGRRLHLPDIKSRNGMRRKAAERAAINA
PMQGTAADIIKRAMVLVDEWIGQQPQDRVRLLMQVHDELVFEVKASDVEQVSADVRRLME
SAAELDVPLIADAGMGDNWDQAH
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atggcaactatcccagaaaatccactaatcctgattgacggatcctcgtatctgtaccgt
gcctaccatgcggcgccgaatctgacgaactcagacggtgagccgaccggcgcggtgttt
ggcgtggtgaatatgctgcgcagcctgcttcgtcagttctcgaccgagcatatcgcggtg
gtgtttgacgccaaaggcaagacgttccgtgatgacttgtatgccgagtacaaagctaac
cgtccgccaatgccggatgatctgcgtgcgcaggttgagccactgcatgcggtgatcaaa
gcgatgggactgccgctgatcgcggtaaccggggtggaagccgatgacgtgatcggcacg
ctggccactcaggcgtcgaaagccggtatgcctgtgctgatcagtaccggcgataaagat
atggcgcagctggtggatgaaaacgtcaccctgatcaacaccatgaccaatgtggtgatg
gatccggaaggcgtcgtggaaaagtttggcattggcccggaactgatcatcgactacctg
gcgctgatgggggacaaggtcgacaatattccgggtgtacctggagtgggtgaaaagacg
gcgaaagccctgctgaccggcattggtggtctggatgcgttgtaccagaacctggatgtc
attccggcgctgggtttccgcggctcgaaaaccatggcgcagaagctgctggataataaa
gacgcggcgtacctgtcgtatgagctggcaaccatcaaactggatgtagagctggacttt
gccccgcatgagttggtgaagggcgagccggatactgatgagctgacccgtctgttcggc
aaattgcagttccgtcgctggctggccgaaatgctcgatggcagcgatggccgcattgtt
gcggatgaatctgcagcgcaggccgcagcaccgaaaaaagacgtggccccggtgattgac
cgcagtggttacgagattgtgctggatgaagcgacgtttgaagcctggttgaccactctg
aacaacgccgaggtggtggcgtttgataccgaaaccgacagcctggattacatggtcgcg
aacctggtcggcgtgtcgttcgcggttgaagaaggcaaagcggcgtatgtgccggtcgcg
cacgattatctggatgcaccgcagcagctggaccgtgactgggtgctcgccaaactgaaa
ccgctgctggaagatccgaacaaagccaaggtcggccagaacctgaagtacgatgccagt
gtgctggcccgctacgatatcgagatgcaggggattcggttcgataccatgctggagtct
tacgtttataacagcgtgattggccgccatgatatggacagcctgtcgttgcgttacctg
gagcacaagaccatcagcttcgaggaaattgccggcaagggcaagaaacaactgaccttc
aaccagatcgatctggcagaagcaggcccgtacgcggccgaagatgcggatattactctg
cgtctgcataatctgctgatcgccaaagtgcacgcagatgacaagctcaagtcggtgttt
gaagatattgaaatgccgctggtcccggttctgtctcgcatggagcgtaccggggttctg
attgataccaagaaactgggtacccagtcggctgaaattgccaaacgtctcgacgagctg
gaaaaagacgcctacgaagtggctgagcaggagttcaacctgagctcgccgaaacagctg
caggcgatcctgttcgagaaaatgggactgccggtcctgaagaaaactccgtccggcacg
ccgtcaacgaacgaagaggtactgcaggagctggcactggattacccgctgccgaaactg
atcctggaataccgcggcctggccaaactgaaatccacctacactgacaaactgccgaag
atggtgaatccggcgacggggcgtgtacatacgtcttaccatcaggctgtgacagcaact
ggtcgtttgtcttccagcgatccgaacctgcagaatatcccggttcgaaatgaggaagga
cgccgtatccgccaggcctttgtggcaccggaaggttacaaaattctggccgtcgactat
tcccagattgagctgcgcatcatggcgcatctgtctggggatcaggcactgcttgacgct
ttccgtcacggcaaggatatccacgctgcgacggcggctgaaattctggggattgcactg
gacgaagtcagcagcgagcagcgtcgccgtgctaaggccatcaactttggcctgatttac
ggcatgagcgcgtttggcctggctaagcaactgggaatgggccgaaatgaggcgcaggac
tacatgaatgtttacttcgagcgctacccgggcgtgctggagtacatggaaagcacccgt
actcaggccagcgagcaagggtatgtagaaaccttgtttggccgtcgcctgcatttgccg
gatattaagtcgcgtaacgggatgcgccgcaaagccgcagaacgggccgcgatcaacgcc
ccgatgcagggcactgcggcagacattatcaaacgggccatggtgctggtcgatgaatgg
attggtcagcagccgcaagatcgggtccgtttgctgatgcaggtgcacgatgaactggtg
ttcgaagtgaaagcgtcggatgtggagcaggtgtctgccgatgttcgccgtctgatggaa
tcagcggcagagttggatgtgccattgattgccgatgccggcatgggggataactgggat
caggcccattaa
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