Photobacterium ganghwense: FH974_17430
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Entry
FH974_17430 CDS
T07175
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH974_17430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgh03019
]
FH974_17430
03400 DNA repair and recombination proteins [BR:
pgh03400
]
FH974_17430
Enzymes [BR:
pgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FH974_17430
Messenger RNA biogenesis [BR:
pgh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FH974_17430
DNA repair and recombination proteins [BR:
pgh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FH974_17430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
DDE_3
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-ProteinID:
QSV16753
LinkDB
All DBs
Position
2:complement(323977..325902)
Genome browser
AA seq
641 aa
AA seq
DB search
MYLHNLKHYFGFDSLRPGQETVIKQLLDGHSSAAIFPTGSGKSLCYQLPALELPHLTLVI
SPLLALMKDQLDFLHSKGIPAASIDSSQSWEDSQRVMQAVRAGEIKVLMISVERLNNERF
RHFISQVPISLLVVDEAHCISEWGHNFRPDYLKLPQHRADLNIPQVLLLTATATPAVIDD
MCAKFAIEKQHIVITGFYRPNLDIAITPASAESKNPQLLEVLNHTPGLPTIVYVTLQKTA
EDLAHWLKAHNYEASAYHAGMDSEQRQQIQQDFMSGRHHCIIATIAFGMGIDKADIRKVI
HFDLPKSIENYSQEIGRAGRDGLRSECVLLADRSGMNVLENFVYGDTPDRSAIRAVLNEI
QAHPQQWEVMLNRLSKTVNIRLLPLKTLLVYLEIESIIEPQYTYFADYRFKLLVDETLVV
NSFQGERQTFVRQIFACSPKARTWHTVDFDALWHTARAERKRVVAAIDYFSDKGWITLES
KQMTDVYRVCQQHFDPEQLTERLYQLFKTKEQSEIKRLADMLALFENEHCLSHTLAGYFA
DHNAPTECGHCSVCRGNVAQLPAPNALQPVSDNLLKTWCDPFIDACPTPPSAHAITRFLC
GMAMPLHTQIKARQISGFGKLEAHPFAKTLEQVRTLFPHTS
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgtatctgcacaatctgaaacactacttcggctttgactcgctgcgaccaggtcaggaa
acagtgattaaacagcttcttgatggccactcgtcagcagccatatttccaacgggctcc
ggcaaatcattgtgctatcagctcccggcactggaattaccccatctgactctggtcatt
tcccctttgctcgcgctgatgaaagatcagctcgattttctccatagcaagggaattccg
gcggcatctattgattccagccagagctgggaagacagccagcgcgtcatgcaagccgtc
agagccggagagatcaaagtgctgatgatctccgtcgagcggctgaataacgagcgtttc
cggcattttatctcacaagtccccatttctctgttggtggttgatgaggcacactgtatt
tcagagtggggacataacttccgccctgactacctcaaactgcctcagcaccgcgccgat
ctcaacattccgcaggtgctgttgctgaccgccacggcaacaccggccgtgatagatgac
atgtgtgccaaatttgccattgaaaaacagcatattgtcatcaccggtttttaccgcccc
aatctggacattgcgattaccccggcctcagccgagagtaaaaacccgcaactacttgag
gtactgaaccacactccggggttacctacaattgtgtatgttaccttgcaaaaaaccgcc
gaagatctcgctcactggctaaaagcacacaactatgaggcctccgcctaccatgccggt
atggacagcgaacaacgccagcagattcagcaggatttcatgtccggccggcatcactgc
atcatcgccacgatcgcgtttggcatgggcatagataaagcggatatccgcaaagtgatc
cactttgatctgcctaaatccatcgagaattacagccaggaaatcggtcgtgccggccgg
gatggtttgcggtctgagtgcgtactgctggcagatcggagtgggatgaatgtgctggaa
aacttcgtctacggtgacaccccggatcgttccgccatccgtgccgtactgaacgagatt
caggctcacccccagcaatgggaagtgatgctcaaccggttatccaaaaccgtcaatatt
cgcctgttgccgctgaaaaccttgctggtctaccttgaaattgaaagcatcattgagccg
cagtacacctattttgcagattaccgattcaaactgttggttgatgaaaccctcgtcgtt
aacagttttcagggggaacgccaaacctttgtccgccagatttttgcctgctcgcctaaa
gcacgcacctggcataccgtcgattttgacgcgttgtggcataccgccagggcggaacga
aagcgtgttgtcgcagccattgattatttcagcgataaaggctggatcacgctggaaagt
aaacaaatgaccgatgtgtaccgggtatgccaacagcactttgatcccgagcaactgaca
gaacgcttgtatcaactgttcaaaaccaaagagcaaagcgagattaaacgactggcagac
atgctggccctgtttgaaaatgagcactgcctcagccacaccctggccggttatttcgcc
gatcacaacgcgccaaccgagtgtggtcactgctcggtttgccgtggcaatgtcgcccaa
ttaccggcacccaatgcgctacaaccggtatccgacaacttgctgaagacctggtgtgat
ccgtttattgatgcatgcccgaccccgccatccgcacatgccataacccgctttttgtgt
ggtatggccatgccgttacacactcaaattaaagcgcggcaaattagcggcttcggcaaa
ctggaggcgcaccctttcgcaaaaaccctggaacaggtacgaacattgtttccgcatacc
agctga
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