Photobacterium ganghwense: FH974_18375
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Entry
FH974_18375 CDS
T07175
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH974_18375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgh03019
]
FH974_18375
03009 Ribosome biogenesis [BR:
pgh03009
]
FH974_18375
Enzymes [BR:
pgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FH974_18375
Messenger RNA biogenesis [BR:
pgh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FH974_18375
Ribosome biogenesis [BR:
pgh03009
]
Prokaryotic type
rRNA helicases
FH974_18375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
DUF3420
DUF8067
Motif
Other DBs
NCBI-ProteinID:
QSV16924
LinkDB
All DBs
Position
2:545086..547014
Genome browser
AA seq
642 aa
AA seq
DB search
MQESVTEFRQLDLADTLLSALDSMGFVAPTPIQAASIPLLLAGNDALGKAQTGTGKTAAF
SLPLLNKLDLNQHKPQAIVMAPTRELAIQVAAEIKVLGQNIKGLKVLEIYGGASIVDQMR
ALKSGAHIVVGTPGRVKDLITRDRLHLDEVHTFVLDEADEMLKMGFVDDVTWIMEQAPES
AQRVLFSATMPPIVKEIVDRFLRDPARIDVAGENRTVAKVEQQFWVVKGVEKDEAMMRLL
ETEDTDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVEHIKRGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRNGKAILLVRTNQIRMLRTI
ERVTKSRMEEIQLPLRDAVAEARLSRLGQELEAQKEEASLESFVELVEKLQESIEVDAAT
LAAMLLKRQQGNRPLFYKGPDPMIAAVERDKQRRDRRRDDRGERGERGERGERRERRTYN
TADWDTYQLQVGREQGVQVKDIVGAIANELGLNKDSIGAIKLAPEHTYVQLPKKLPNEVA
AQLKKLRIRQNDVKAVVVEDDVLREHRRGGREGNRGEGREGNRGGYRGNANNGSREGFRP
RRDGERRFDRNRGGDNRGSFRGERNHGSTGAPQRRSKPRFED
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaatctgttacagaatttcgccagttagacctggccgacacactactatccgca
cttgactcaatgggcttcgttgcgccgactccaattcaggcggcgtctattcctcttcta
cttgccggtaatgatgcgctgggtaaagcgcagacaggtacgggtaaaacagctgcattc
tcactgccgctgctgaacaaacttgatctgaaccagcacaagccacaagccatcgttatg
gcgccgactcgtgagctggctattcaggttgcagctgagattaaagttcttggtcaaaac
atcaagggcctgaaagttctggaaatttacggtggtgcttctatcgttgaccagatgcgt
gctctgaaatcaggcgctcacattgttgtgggtactcctggtcgtgttaaagacctgatc
actcgtgatcgtctgcacctggacgaagtacacactttcgttctggatgaagcagatgaa
atgctgaagatgggtttcgttgatgacgtaacctggatcatggaacaagcgcctgaatcg
gcacagcgtgttctgttctcagcaactatgcctccaatcgttaaggaaatcgttgatcgt
ttcctgcgtgatccagcgcgtatcgacgtagccggtgaaaaccgtactgttgctaaagtt
gagcagcagttctgggttgtaaaaggcgtagaaaaagatgaagcaatgatgcgtctgctg
gaaacagaagacactgacgcgtcaatcgtgtttgtacgtactcgtcaggataccgagcgt
ctggctgactggctgtctgcgcgtggctttaaggctgcggcactgcacggtgatattcct
cagtcactgcgtgagcgtactgttgagcacatcaaacgcggtgtgattgatatcctggtt
gcaactgacgttgttgctcgtggtcttgacgtgccacgtatcacgcacgtattcaactac
gacatcccgttcgatgtagaatcgtacatccaccgtatcggtcgtacaggccgtgccggt
cgtaacggtaaagcgatcctgctggttcgtaccaaccagattcgtatgctgcgcactatc
gaacgcgtgactaaatcacgcatggaagaaatccaacttcctcttcgtgatgctgttgct
gaagcccgtctgagccgtctgggccaggagctggaagctcagaaagaagaagcaagcctg
gagtctttcgttgagctggtagaaaagctgcaagaaagcatcgaagttgacgcggcaaca
ctggctgcaatgctgctgaagcgtcagcagggtaaccgtcctctgttctacaaaggtccg
gacccaatgatcgctgcagttgagcgcgacaagcagcgtcgtgaccgtcgtcgtgatgac
cgtggcgagcgcggtgaacgtggcgaacgcggtgagcgtcgtgagcgtcgtacttacaac
actgctgactgggatacttaccagctgcaagtgggccgtgagcaaggcgtacaggttaaa
gatatcgttggcgcaatcgcaaacgagctgggcctgaacaaagacagcatcggtgcaatc
aaactggctcctgagcacacttacgttcagctgcctaagaaactgccaaacgaagttgca
gctcagcttaagaagctgcgcatccgccagaacgacgtgaaagcggttgtggtagaagac
gatgtactgcgtgagcaccgtcgtggtggccgcgaaggcaaccgtggtgaaggccgtgaa
ggcaaccgtggtggttaccgtggtaatgccaataatggcagccgtgaaggtttccgccca
cgtcgtgacggtgagcgtcgtttcgaccgtaaccgtggcggcgataaccgtggcagcttc
cgtggtgaacgtaaccacggtagtacgggtgcgccacagcgtcgtagcaagcctcgcttc
gaagactaa
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