Photobacterium ganghwense: FH974_19495
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Entry
FH974_19495 CDS
T07175
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pgh
Photobacterium ganghwense
Pathway
pgh03030
DNA replication
pgh03430
Mismatch repair
pgh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FH974_19495 (dnaE)
03430 Mismatch repair
FH974_19495 (dnaE)
03440 Homologous recombination
FH974_19495 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgh03032
]
FH974_19495 (dnaE)
03400 DNA repair and recombination proteins [BR:
pgh03400
]
FH974_19495 (dnaE)
Enzymes [BR:
pgh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FH974_19495 (dnaE)
DNA replication proteins [BR:
pgh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FH974_19495 (dnaE)
DNA repair and recombination proteins [BR:
pgh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FH974_19495 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
UDG
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QSV17124
LinkDB
All DBs
Position
2:789326..792682
Genome browser
AA seq
1118 aa
AA seq
DB search
MKALLCRTEFSLGESVLKADKLAPKAAEMGYEAIVVADTMSISSIIPAQLGSTDTDVKVI
CGVRLTIVPDPQLEYRTKEAGESAKGIRQDEFSMTLLIKNDQGFVDVCELLTLSNREEQF
YFKPRVSPEQVAECFAKGNVLMLSSDKGSVFKLPTHAELLDKMIDAGNASDCVMALYPIE
TPLYDQINKKALEYANQKELVVAAFYPAYYETIEDADIKDFAYLVINNVKADQPYRALVP
YNRESCIQERSRLLKSLKEFAVRMGVRVSPDYVSANQDLIIEQCNWRWHKLDVSLPKMAD
DEDKTLAELAVKGLKDRFVEPCFGYVPPESERPKYIEALKYELGILKKLGFAPYFLLVND
LIQASKTRKIPLGCGRGSVGGSVVAWSLGITETDPIRHGLLFERFINPERLDLPDADLDF
SQSRRHEVLEYLESKYGEEYVAGIPNYMYLGSASALRDAGRIYGIDQTELAVTKEITGDG
DNLPLEDAKEELGGIGKFAAKYPAVFDLACKLQNTMRGYGRHAAGVIVAGDKLTNRSVVE
RRGGERTINWDKRHCEDMGLVKLDVLGLATLDLLQLACDYVKERHGKDIDIYSVPLDDEK
TLKTLSEGRTTAVFQLESSGMKKTLRDLGNGIEPFTFETVTATTALFRPGPMQSGALDTF
VAVAKGYERAEAIHPLLDELLSETNGVMVYQEQTMKACQIMAGFSMAEADAVRSAMGKKN
AEKMASMKSLFVEGCEKVNGIPEAVAGDVWDKIEKFAGYGFNKSHSVAYSLLSFCSAYLK
TYYPAEFFAAALTILGSDKHPAIVRDAREHGIEVVPPCINHSSDRLEIGYDSKREQTVLY
APFSAVKGCSAAGAKAIIEARAKCGGRFSTVEQFEEVVLKRACNARVREALRKVGAFADI
DPKELDARHPDRRKDQAALMGDIMIDAVGVERDFICDAKVCAQVNALHSRIEKETELGEA
IVRPTIGRKPKVMIVLDAPNGWDEKSGYIMSEGHDDFKTALTNAGFKMGDIYATSLMKIV
KGKDEQFTSEQINLFKDYFAHELEYTKPTVVIAMGSLAAGYFNTSKLKPSELSGRNEYDS
ARDCNIIFGFNPGMLHFKPEKKTELEDICKKAYEIVNG
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgttactgtgtcgcaccgagttttcgttgggtgaatctgttttaaaggctgat
aagctggctccgaaagccgctgaaatgggatatgaggccattgttgttgccgataccatg
tcaatcagctcgatcattccggcacagcttggctcaactgacactgatgtaaaagtaatc
tgcggtgtccgactgacgattgttccagatccgcaactggaataccgcaccaaggaagcg
ggggaaagcgccaaaggcatcagacaagatgagttctcaatgaccctgctaatcaagaac
gatcagggctttgtggacgtttgcgagctgctgacacttagcaaccgcgaagagcagttc
tatttcaaacctcgcgtaagtccggagcaagtggcggagtgtttcgcaaagggcaacgtt
ctgatgctttccagcgacaaagggagcgtgtttaagctgccaacccatgcggagctatta
gataaaatgattgacgcagggaatgcgtctgactgcgttatggcgctatacccgatcgaa
acgccactgtatgaccaaatcaacaagaaagcgcttgaatacgccaatcaaaaagagctg
gttgtagccgcgttctatcctgcctactacgaaaccattgaagatgccgatatcaaggac
tttgcgtatctggttatcaacaacgttaaggctgaccagccatatcgcgctcttgttcca
tacaaccgtgagtcctgcatccaagagcgctcacgcctgctgaaatcactgaaagagttc
gccgttcgcatgggtgttcgggtatcgccggactacgtatcggcaaaccaagacctgatc
atcgagcaatgcaactggcgctggcataagctggacgtgtcattgccgaaaatggcagat
gatgaagacaagacactggcagagttggcggtgaaaggcttgaaggatcgttttgtcgaa
ccttgttttggctatgttccgcctgagtcagagcgtcccaaatacatcgaggcgctaaag
tatgagcttggcattctgaaaaagcttggctttgcaccttactttctgctggtaaacgat
ctgattcaggcttcaaaaacgcgcaaaattccattgggctgcggtcgtggttccgtaggg
ggttctgtcgttgcctggtcgttaggcattactgaaactgaccctatccggcatggtctt
ctgtttgaacgcttcattaaccctgagcgtttggacttgcccgatgctgacttggacttt
tcacaatcccgccgtcatgaagtgcttgagtatcttgagagcaaatacggtgaagagtat
gtggccggcattccaaactacatgtatttaggctccgcttctgcgttgcgtgatgccgga
cgtatctatggtattgaccagactgaactggccgttaccaaggaaattaccggtgacggt
gacaatttgcctttggaagatgcgaaagaagagctgggtggcatcggtaagtttgcagcc
aagtatcctgccgtgtttgatttggcctgtaagttacaaaacacgatgcgaggctatggg
cgacatgcggcgggtgtgattgttgccggtgacaaacttaccaaccgttctgtcgttgag
cgacgtggcggcgagcgcactatcaattgggacaaacggcactgtgaggacatggggctg
gttaagctcgacgttctaggcttggcgacactcgatttgctccaactggcctgtgactac
gtaaaagagcgtcacgggaaggacattgatatttactcagtcccgcttgatgacgagaag
acgctgaaaacgctatcggaaggcagaacaacagccgtgtttcagcttgaatcttcgggc
atgaagaaaacacttcgtgaccttgggaatggtattgagccattcacgtttgaaacggta
acagcgacaacagcactgttccgaccgggtccaatgcagtcaggcgcacttgatactttc
gtggccgttgccaaaggctatgagcgcgcagaggcgattcatccgctgcttgatgaactg
cttagcgaaaccaacggcgtaatggtttatcaggagcaaaccatgaaagcctgtcagatc
atggcggggttctctatggctgaggcggatgccgttcgctctgctatgggtaaaaagaac
gccgagaagatggcctcgatgaagagtctgttcgttgaaggctgcgagaaggtcaatggt
attccggaagctgtcgccggtgatgtatgggacaagatcgagaagtttgcaggctatggc
ttcaacaaatctcactcggtggcttactcgctactgtcattctgctctgcatacctcaag
acatactatcctgctgagttctttgccgcagcacttactatcttgggcagtgacaaacat
ccggccattgttcgtgatgcgcgtgagcacggtatcgaagttgttccgccttgtatcaac
catagctcagatcgcctagaaattggctatgacagcaagcgagagcaaacggtgctgtat
gcgccattctccgctgttaaaggctgtagtgctgcgggtgcgaaagccattattgaggct
cgtgccaaatgcggtggtcgtttctctactgtggagcagttcgaagaggtggttttaaag
cgagcctgtaatgctcgcgttcgtgaggcacttaggaaagtaggggcatttgctgacatt
gacccaaaggaactggacgctcgacaccctgacagacgcaaagatcaagcggctttaatg
ggcgatatcatgattgatgctgtcggtgttgagcgtgactttatctgtgacgccaaggtt
tgcgcccaagtgaatgctttgcatagtcgcattgagaaggagactgagctaggggaagcc
attgtgcgtccgactattggcagaaagcccaaagtgatgatcgtgcttgacgcccctaat
ggatgggatgagaaatccggctatatcatgtcagaaggtcacgatgactttaagacagcg
cttactaatgcagggttcaaaatgggggatatttacgccaccagtttgatgaagattgtg
aagggtaaggatgagcaattcacctccgagcaaatcaacctgtttaaggactactttgcg
catgaattggaatacaccaagcctacggtggtgatcgcaatgggttcgctggcggctggg
tatttcaatacctccaagctcaagccaagtgagctgtccggtcgcaacgagtatgattct
gcaagggattgcaacatcatattcggctttaatccaggtatgttgcacttcaaacctgag
aagaaaaccgagctggaagatatctgcaaaaaagcctatgagatagtcaacggctaa
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integrated database retrieval system
