Porphyromonas gingivalis W83: PG_1721
Help
Entry
PG_1721 CDS
T00145
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pgi
Porphyromonas gingivalis W83
Pathway
pgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG_1721 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgi03019
]
PG_1721 (vacB)
03016 Transfer RNA biogenesis [BR:
pgi03016
]
PG_1721 (vacB)
Enzymes [BR:
pgi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PG_1721 (vacB)
Messenger RNA biogenesis [BR:
pgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PG_1721 (vacB)
Transfer RNA biogenesis [BR:
pgi03016
]
Prokaryotic type
tRNA degradation factors
PG_1721 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_HELZ2
RNase_II_C_S1
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
AAQ66728
UniProt:
Q7MU45
LinkDB
All DBs
Position
1810424..1812532
Genome browser
AA seq
702 aa
AA seq
DB search
MTKEEMRNAILDIFQSNPQSVMNYKQVSHLMGVEAAPQKLMVNSLMEDMAVDDILHEIER
GRYRYNALGLIVIGTFERRFNGRNSFIPEGGGTPIFIAERNSAHAMDGDKVKVQLFAKRR
GRAPEAAVIEIIEQKQATFVGKIQINRDFAFLVTEDRTLANDIFIPKDNLGNAKNGDKVI
VRILEWPEQSKNPIGEVQAVLGPAGDNDAEMNAILAEFGLPYVYPQEVEEAADRLDGKIT
EEELARREDFRSILTFTIDPKDAKDFDDAISFRPLEDDCYEVGVHIADVSHYVTEGGIID
QEAYNRATSIYLVDRTIPMLPERLCNDLCSLRPDEEKYAYSCIFRMNDEAKVLDYRICHS
VIKSDRRFAYEEAQAVIETGEGDCKEAILKLNELAQRLRKERFQNGAIAFERKEVRFEID
EKGRPLGVIVKESKEANKLIEEFMLLANRTVARHIGEETQGKRAKTFVYRIHDLPDPDKL
ETLSDFIRRFGYKLRTTGSNVEVSKSINSLLDNIQNKPEENLISTVAIRSMAKAIYSTDN
IGHYGLAFDFYTHFTSPIRRYPDLMVHRLLTKYLSGGSSVDKNDYEEKCKHSSAMEQLAA
SAERASIKYKQVEFMSEHLGKVFDGVISGVTEWGLYVELKENMCEGLIPIRCLDDDYYEY
DDKNFCLIGRRYRHRYSLGDAITVRVAQANLDRKQLDFEPVS
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaggaggagatgcgcaatgccattttggacatattccaaagcaatcctcagagc
gtgatgaactacaagcaggtaagccatctgatgggagtagaagctgcaccacaaaagcta
atggtgaactccctgatggaagacatggctgtggatgacatcctgcatgagatagagcgc
ggacgctatcggtacaatgccttgggattgattgtcataggcacttttgagcgtcggttc
aatggccgcaattcgtttattcccgaagggggcggaacgcccattttcattgccgaaaga
aattcggcacatgccatggacggtgacaaagtgaaagtacaactctttgccaaacgtcgt
ggtcgcgcgccggaagccgccgtgatcgagatcatagaacagaagcaggccactttcgtc
ggcaagatccaaatcaatagagactttgctttccttgttacggaagatcgcaccttagcg
aatgatattttcatccccaaggacaacctcggcaacgccaaaaacggcgataaggtaata
gtccgaatactcgaatggccggagcaatccaagaatcccatcggagaggtacaagccgta
ttgggaccggccggagacaacgatgccgagatgaatgccattttggccgaattcggattg
ccttatgtctatccccaagaggtggaagaggcagccgaccgtttggatgggaagatcaca
gaagaagagcttgcccgaagagaagattttcggtcgatactcaccttcaccatcgacccg
aaggatgccaaggacttcgatgatgccatatcgttccgtccgctggaggatgattgctat
gaggtgggcgtacatatcgccgatgtctcgcactacgtaaccgagggcgggatcatagat
caggaagcatacaaccgtgccacaagtatctatctcgtggatcgcaccatcccgatgctc
cccgaacgcctctgcaacgacctttgttccctccgccccgacgaagaaaaatatgcctat
agctgcatattccggatgaatgacgaagccaaagtattggattatcgcatctgccactcc
gtgatcaagagcgaccgccggttcgcttacgaagaggcacaagccgtgatcgagaccggc
gaaggcgactgcaaggaggccattctcaaactcaacgagctggcacagcgacttcgcaaa
gaacgattccaaaacggagcgattgctttcgaaagaaaagaagttcgcttcgaaatagat
gagaaaggtcgtcctctgggtgtaatcgtgaaggagagcaaggaagccaacaagctaatc
gaagagttcatgcttctggccaataggacggtagcccgacatataggcgaagagacccaa
gggaaacgagccaagaccttcgtttatcgtatccacgacctgcccgatcccgacaaattg
gagaccttgtcggacttcatccgccgattcggttacaagttgcgcaccacaggtagtaat
gtggaggtaagcaagagcatcaattcgcttctggacaacatccaaaacaagccggaagaa
aatttgatctctaccgttgccatacgctccatggctaaggccatttactcgacggacaac
atcggccactacggattggcattcgatttctacacccacttcacttcgcccattcgtcgc
tatccggacttgatggtgcaccgattgctgacgaaatacctttcgggtggaagttccgta
gacaaaaatgactatgaggaaaagtgcaagcattcatctgcaatggagcaattggcagct
tcggccgaacgcgcttccatcaaatacaaacaggtggagtttatgtccgaacacctcggc
aaagtattcgatggtgtaatatcgggcgtcaccgaatggggattgtacgtagagctgaag
gaaaatatgtgcgaaggtctcatacccatccgctgtctcgacgacgactactacgagtac
gacgacaagaacttctgcctcatcgggcgtcgctatcgtcaccgctacagtctgggcgat
gccatcaccgtacgtgttgcccaagccaatctggacagaaagcaactcgacttcgaaccc
gtaagctaa
DBGET
integrated database retrieval system
