Porphyromonas gingivalis W83: PG_2099
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Entry
PG_2099 CDS
T00145
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pgi
Porphyromonas gingivalis W83
Pathway
pgi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG_2099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgi03019
]
PG_2099
Enzymes [BR:
pgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PG_2099
Messenger RNA biogenesis [BR:
pgi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG_2099
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
IF2_N
Cas3-like_C_2
AAA_22
Utp25_C
HEM4
tRNA-synt_1b
Motif
Other DBs
NCBI-ProteinID:
AAQ67058
UniProt:
Q7MT81
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All DBs
Position
complement(2206739..2208022)
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AA seq
427 aa
AA seq
DB search
MRFDELNLGDEVLDGLDAMNFIETTPVQAATIPPILEGRDVIACAQTGTGKTAAYLLPIL
DRLSAGEFASDVVNAVIMAPTRELAQQIDQQVEGFSYFMPVSAVAIYGGTDGVAWEQQRR
GMAMGADIVIATPGRLISHLNLGSADLSHVSYFVLDEADRMLDMGFFDDIMQIYKQLPSS
CQTVMFSATMPPKIRKLAASILRDPIEVEIAISRPPESIMQSAYICHEAQKLPILRKLFE
QSAPKRTIIFASAKLKVRELTSTLRKMGFNVADMHSDLEQSQREQVMRDFKNGYVDVLVA
TDIVARGIDIDNIRVVINYDIPHDPEDYVHRIGRTARGTNGEGLAITFVSEEEQSDFHKI
ETFLGKSVYKLPVDLEFGEVPAYEPAKRRPRRLGRSGEARSGRSETNKRQGKTASNGRRR
GGTRQRR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgcgctttgatgaattgaatttaggagatgaagtattggatggtctcgatgccatgaat
ttcatcgagaccacacctgtgcaggctgcaaccatcccacccattctggagggtcgcgat
gtgatcgcttgtgcccagaccggcaccggcaagacggcagcctatctgctccccatactg
gatcgcctgagtgcaggcgagtttgcctccgatgtggtgaatgccgtgatcatggctccc
actcgcgaactggcgcagcaaatagatcagcaagtggaagggttttcttacttcatgccg
gtatcggccgtagccatatacgggggtacggacggggtggcatgggagcagcaacgtcgg
gggatggctatgggggcggacatcgtgatagccacaccgggacgtctgatctcgcatctg
aatctcggttcggccgacctctcccacgtctcctacttcgtattggacgaagccgaccgc
atgctggacatgggtttcttcgatgacatcatgcagatatacaagcagctgccgagttcg
tgccagacggttatgttttcggctacgatgccccccaagatccgcaagctggcagcatct
attctaagggatccgatagaggtggagatcgccatcagccgtccgcccgagagcatcatg
cagagcgcatacatttgtcacgaagcgcagaagctgccgatactccgcaagctcttcgag
cagtcggctccgaagcgtaccattattttcgcctcggccaagctcaaagtgcgtgagctg
acttccactctccgcaagatgggtttcaatgtggccgatatgcactccgatctggagcag
tcccagcgcgaacaggtgatgcgcgacttcaaaaacggctatgtggatgtacttgtggcc
actgacatcgtagcgcgagggatcgacatcgacaacatacgcgtagtcatcaactacgac
attccccacgatcccgaggactatgtacaccgtatcgggcgtactgcccgaggaacaaac
ggggagggtctggctatcactttcgtctccgaggaagagcagagcgacttccacaagatc
gagacgtttctgggcaaatcggtctataaattgcctgtcgatctggagtttggtgaagtc
ccggcttacgaaccggcgaaacgtcgccctcgccgtttggggcgaagcggcgaagcgcgt
tctggtcgatccgaaacgaacaaaagacagggaaaaaccgcttcgaacggacgcaggcgc
ggaggcacgagacagaggcgatag
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