Pteropus vampyrus (Indian flying fox): 120600280
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Entry
120600280 CDS
T07511
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pgig
Pteropus vampyrus (Indian flying fox)
Pathway
pgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120600280 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgig03041
]
120600280 (DDX42)
Enzymes [BR:
pgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120600280 (DDX42)
Spliceosome [BR:
pgig03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120600280 (DDX42)
Complex B
120600280 (DDX42)
Complex C
U2 SnRNP specific factors
120600280 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
120600280
NCBI-ProteinID:
XP_039715666
LinkDB
All DBs
Position
Unknown
AA seq
936 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITSLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KSGSSAAGASGWTSAGSLNSVPTNSSQQGHNSPDSPIASATKGIPGFGNTGNLSSAPVTY
PTAGAQGVNNTASGNNSREGTGGGNGKRERYTDNRGGSRHSHGESGSGSRHGDSPRHGDG
GRHGEGYRYPESSSRHADGHRHGENRHGGGGRHGESRGANDGRNGESRKEGCNRESRMDP
KVDSSKMDKMDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcactaagaggggatttggctttggaggttttgcc
attagtgctggaaagaaggaggaacccaaactcccacaacagtcccacagtgcctttggg
gcgaccagctcttcttctggatttggaaagtcggctccaccacagctcccttctttctac
aaaattggatctaaacgggccaattttgatgaagaaaatgcatattttgaagatgaggaa
gaagactctagcaatgtcgatttaccttatattcctgctgaaaactcacctacccgccag
caattccattccaagccggcagattctgatagcgatgatgatcccttggaggcattcatg
gctgaagtggaggatcaagcagctagagacatgaagaggcttgaagaaaaggacaaggaa
aggaaaaacgtgaagggtattcgagatgacattgaagaggaagatgaccaagaagcttac
tttcggtacatggcagagaacccaactgctggtgtggttcaagaggaggaagaagataat
ttagaatacgatagtgatggaaatccgattgcaccttccaaaaaaatcattgatcctctt
cctcccattgatcattcagagattgactatccgccatttgaaaaaaatttttacaatgag
cacgaagagataaccagcctcaccccacagcagttaatagatctccggcataagcttaat
cttcgggtctctggtgccgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacagcttatgcaccagattcggaaatccgagtacacacagcccactccaatacag
tgccagggtgtgcccgttgcattaagtggtagagacatgattggtattgccaagacaggc
agtggaaaaactgcagcctttatctggcccatgttgattcatataatggaccagaaggaa
ttggaaccaggtgatggaccaattgcagtgattgtatgtcctactagggagctttgccaa
cagattcatgcagaatgtaagcggtttgggaaagcatataatcttcggtcagtggctgtg
tatggcggagggagcatgtgggagcaagccaaggcccttcaggaaggggcagagattgtt
gtgtgtaccccaggtcgactgatcgatcatgtgaagaagaaagctaccaatcttcaaaga
gtctcttatcttgtgtttgacgaagcagatcgaatgtttgacatgggattcgagtaccag
gtgcgatccatagccagtcatgtccgtcctgacagacagactcttttattcagtgcaact
tttaggaaaaagattgaaaaactggccagagacatcctgatcgacccaattagagtggtg
cagggagatatcggagaggcaaatgaagatgtgacacagattgtggagattctccattct
gggcctagtaaatggaattggcttacccggcgtctggtagagtttacctcttcagggagt
gtcctcttgtttgttactaaaaaggccaatgctgaggagctggccaacaaccttaagcag
gaaggtcataatcttgggctgcttcatggagacatggatcagagtgaaagaaacaaagtc
atttcagactttaagaaaaaggatatcccagtcctggtggccacagatgttgcagctcgt
ggtctggacattccttcgattaagactgtcattaactatgacgtggcacgagacattgat
acgcatactcataggattggccgcacaggacgagcgggtgagaagggcgttgcctatacc
ttgttgactcccaaggacagcaattttgctggtgaccttgtccggaatttggaaggagcc
aatcagcatgtttccaaggaactcctggatctggcaatgcagaatgcctggtttcggaaa
tcccgcttcaaaggagggaaaggcaaaaagctgaacattggtggaggaggcctaggctat
agggagcggcctggcctaggctctgagaacacggaccgaggaaacaacaacaatgtaatg
agcaactatgaggcctacaagccctccacgggagccatgggagatcggctgacagcaatg
aaagcggcttttcagtcacagtacaagagtcactttgttgccgccagtttaagcaaccag
aagtctggaagttctgctgctggagcaagtggatggacaagtgcaggaagcttgaattct
gttccaactaattcatcccagcagggccataacagtcctgacagccccattgccagtgcc
accaagggcatcccaggctttggcaacactgggaacctcagcagtgccccagtgacctac
cctactgctggagctcagggggtcaacaacacagcttcaggaaataacagccgagaaggg
actgggggtggcaatgggaagagagagagatacactgataaccggggtggcagccgtcat
agtcatggagagagtggcagtggcagtcggcatggtgatagcccacgtcacggagatggt
ggtcgccatggagagggataccgctacccagaaagcagcagccgtcatgctgatggccat
cgtcatggggagaacagacatggaggtggaggccgacatggggagagccgaggtgcaaat
gatggtcggaatggtgaaagcaggaaagaaggttgtaaccgtgagagcaggatggacccc
aaggtggacagcagcaagatggacaaaatggacagcaagacagataagacagctgatggt
tttgctgtccctgagcctcccaagcgcaagaaaagtcgatgggacagttag
DBGET
integrated database retrieval system
