Pteropus vampyrus (Indian flying fox): 120602422
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Entry
120602422 CDS
T07511
Symbol
LSM5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
pgig
Pteropus vampyrus (Indian flying fox)
Pathway
pgig03018
RNA degradation
pgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120602422 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
120602422 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgig03019
]
120602422 (LSM5)
03041 Spliceosome [BR:
pgig03041
]
120602422 (LSM5)
Messenger RNA biogenesis [BR:
pgig03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120602422 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
120602422 (LSM5)
Spliceosome [BR:
pgig03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
120602422 (LSM5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
120602422
NCBI-ProteinID:
XP_039718621
LinkDB
All DBs
Position
Unknown
AA seq
139 aa
AA seq
DB search
MREQQPNRTLGLRLVEPARPAAGWGGSGSALFQTPFERRWTQATSGAAMAANATTNPSQL
LPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQI
LLNGNNITMLVPGGEGPEV
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgagcagcagcccaatcgcacgctcggcctccgattggtcgagcctgcccggcct
gcggcgggttggggggggagcggaagcgcgctctttcaaacgccgttcgaacgtcgatgg
acgcaggccacttccggtgcagccatggcggccaacgctaccactaacccgtcgcagctg
cttcctctagagcttgtggacaagtgtataggatcaagaattcacattgtaatgaagagt
gataaggaaatcgttggcacgcttctaggatttgatgactttgtcaatatggtactggaa
gatgtcaccgagtttgaaatcacaccagaaggaagaaggattactaaattagaccagatt
ttgctaaatggaaataatataacaatgctggttcctggaggagaagggcctgaagtgtga
DBGET
integrated database retrieval system
