Pteropus vampyrus (Indian flying fox): 120606574
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Entry
120606574 CDS
T07511
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pgig
Pteropus vampyrus (Indian flying fox)
Pathway
pgig03013
Nucleocytoplasmic transport
pgig03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pgig00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120606574 (UPF1)
03015 mRNA surveillance pathway
120606574 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgig03019
]
120606574 (UPF1)
Enzymes [BR:
pgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120606574 (UPF1)
5.6.2.5 RNA 5'-3' helicase
120606574 (UPF1)
Messenger RNA biogenesis [BR:
pgig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120606574 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
120606574 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120606574
NCBI-ProteinID:
XP_039723859
LinkDB
All DBs
Position
Unknown
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGPG
GPVGAGAGVAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
VHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAAERVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPSQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcactttcctggacaccgaggag
acggagctgctcggcgcagacacgcagggctctgagtttgagttcaccgacttcactctc
cccagccagacgcagacgccccccggcggccctggcggtcctgggggtggcggcccaggg
ggcccggtcggtgcaggcgcaggagttgcggccggacagctcgacgcgcaggtcggagga
cctgaaggcatcctgcagaatggggccgtggatgacagtgtggccaagaccagccagttg
ttggccgagttgaacttcgaagaagatgaagaggatacttattacacaaaggacctccca
gtacatgcctgcagttactgtggaatacatgatcctgcttgcgtggtttactgtaatacc
agcaagaagtggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactttgcacaaagatgggcccctgggggagacg
gtcctggagtgttacaattgtggctgccgcaacgtcttcctccttggcttcatccctgct
aaggctgactcggtggtagtgctgctgtgcaggcagccttgtgccagtcagagcagcctc
aaggacatcaactgggacagctcgcaatggcagcccctgatccaggaccgctgcttcctg
tcttggctggtcaagatcccttcagagcaggagcagctgcgggctcggcaaataaccgct
cagcagatcaacaaactagaggagttgtggaaggagaatccttctgccaccttggaggac
ctagagaagccgggggtggatgaggagccgcagcatgtcctcttgcggtatgaggatgcc
taccagtaccagaacatattcgggcctctggtcaagctggaggccgactatgacaagaag
ctcaaagagtcccagactcaagataacatcacagtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagatatgcggctcatgcagggtgatgagatatgcctgcgatacaaaggg
gacctagcacccttgtggaaagggatcggccatgtcatcaaggtccctgataattacggt
gatgagattgccattgagctgcggagcagtgtgggtgcacctgtggaggtgacgcataac
ttccaggtggactttgtgtggaaatccacctcgtttgacaggatgcagagtgcactgaag
acctttgctgtggatgagacctccgtgtcaggttatatctaccacaagctactcggccac
gaagtggaggacgtgatcatcaagtgccagctacccaagcgcttcacagcacaggggctc
cctgacctcaaccactctcaggtttatgctgtaaagactgtgctgcagagacctctaagc
ctgatccagggaccaccaggcacggggaagacagtaacctcagccaccatcgtctaccat
ctggcacggcagggcaatgggcccgtgcttgtctgtgctccaagtaacatagctgtggat
cagctgacggagaagatccaccaaactgggctgaaagttgtgcggctctgtgccaagagt
cgcgaggccatcgactccccggtgtcattcctagccctgcataaccagatccggaacatg
gatagcatgccagagctgcagaagctgcagcagctgaaggatgagactggggagctgtca
tctgctgatgagaagcggtaccgagccctgaagcgcacggccgaaagggagctgctcatg
aatgcggatgtcatctgctgtacgtgtgtgggtgcgggggaccccaggcttgccaagatg
cagttccgctccattttaattgatgagagcacccaagccaccgagccagagtgcatggtc
cctgtggtcctcggagccaagcagctgatccttgtgggtgaccactgccagctcggcccc
gtggtgatgtgcaagaaggcggccaaggccgggctgtctcagtcgctgttcgaacgcctc
gtggtgctgggcatccgtccgatccgcttgcaggtccagtatcggatgcaccctgcgctc
agcgcttttccgtccaacatcttctatgagggttctctgcagaatggcgtcacggcagcg
gaacgtgtaaagaaagggtttgacttccagtggccccaacctgataagccgatgttcttc
tatgtgacccagggccaggaagagatcgctagttcgggtacctcctacctgaacaggacg
gaggctgcaaacgtggagaagatcaccacgaagctgctaaaggcaggtgccaagccagac
cagattggcatcatcacgccctatgaggggcagcgctcctacttggtgcagtatatgcag
ttcagtggctccctgcacaccaagctctaccaggaggtggagattgccagtgtggatgcg
ttccaggggcgtgagaaggacttcatcatcctctcctgcgtgcgggccaatgagcaccaa
ggcattgggtttttaaacgaccccagacggcttaatgtggccctaacccgagcgcgatac
ggggttatcattgtggggaaccccaaggccctatccaagcagccactctggaaccacctg
ctgaattactacaaggagcagaaggtgctggtggaggggcccctgaacaacctgcgagag
agcctaatgcaattcagcaagccccggaagctggtcaacaccatcaaccctggagctcgc
ttcatgaccacagccatgtatgacgcccgggaggccatcatcccaggatcagtttatgat
cggagcagccagggtcggccctcgaacatgtacttccagacccatgaccagctcggcatg
atcagtgctggccccagccacgtagctgccatgaacattcccatccccttcaacctggtc
atgccacccatgccacccccggggtattttggacaggctaacgggccagctgcaggccgg
ggcaccccaaaaggcaaaacgggtcgtggcggacgccagaagaaccgctttgggcttcct
gggcccagccagacaaacctgcccagcagccaggccagccaggatgtggcatcacagccc
ttctcacagggtgccctgacgcagggctatatctccatgagccagccctcccagatgagc
cagcctggcctctcccaacctgagctgtcccaggacagttaccttggtgatgagtttaag
tcccagattgatgtggcgctgtcacaagactccacataccagggagagcgggcataccag
cacggcggagtgacgggcctgtcccagtactag
DBGET
integrated database retrieval system
