Pteropus vampyrus (Indian flying fox): 120610258
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Entry
120610258 CDS
T07511
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pgig
Pteropus vampyrus (Indian flying fox)
Pathway
pgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120610258 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pgig03041
]
120610258 (SNRNP200)
Enzymes [BR:
pgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120610258 (SNRNP200)
Spliceosome [BR:
pgig03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120610258 (SNRNP200)
Complex C
U5 SnRNP specific factors
120610258 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
DUF603
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
120610258
NCBI-ProteinID:
XP_039728490
UniProt:
A0A6P3RHB4
LinkDB
All DBs
Position
Unknown
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEVVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWHEKFQDRLSKKVVLLTGETSTDLKLLGKGSIVIGTPERWDILSRRWK
QRKNVQNISLFVVDEAHLIGGENGPVLEVICSRMRYISSQIERPIRVVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPLERRLVGQLFSSGAIQVVVASRSLCWGLSVTAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLSDSQMADVARFCNRYPNIELSYEVVDKDGIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtgaccgcccgtagcctgcagtacgagtacaaggcgaactcgaatcttgtc
ctccaagctgaccgctctctcattgaccgtacccgccgggatgagcccacgggagaggtg
ctgtccctggttgggaagctggagggcacccggatgggagataaggctcaacggaccaaa
ccgcagatgcaggaggaaagaagagccaagcgaaggaagcgtgacgaggaccggcacgac
atcaacaagatgaaggggtacacgctgctctcagagggtatcgacgagatggtgggcatc
atttacaagcccaaaaccaaagagacccgggagacctacgaggtgctgcttagcttcatc
caggctgcccttggggaccagccacgtgatattctgtgtggggcagctgatgaagttcta
gctgtcctaaagaatgaaaagcttcgtgataaggaaaggagaaaggagattgacttgctg
ttgggtcagacagatgataccagataccatgttctagtgaacttgggcaaaaagatcaca
gactacggtggagacaaggaaatccagaacatggatgacaacattgatgaaacatatggt
gtgaatgtacagtttgagtctgatgaggaggaaggtgacgaagatgtgtatggggaggtt
cgagaagaggcctccgatgatgacatggaaggggacgaggcagtggtgcgctgcaccctt
tcggctaatcttgttgcatctggggaactgatgagttccaagaagaaggatttgcaccct
cgggacattgatgccttctggctgcagcggcagctcagtcgcttctatgatgatgccatc
gtgtcgcagaagaaggcagacgaagtgttggagatcttgaagacagcgagcgatgaccgg
gagtgtgagaaccagttggtgctgctgctcggcttcaacactttcgattttattaaagtg
ctgcggcagcacaggatgatgattttgtactgtaccttgctggccagtgctcagagtgaa
gctgaaaaggaaaggatcatgggaaagatggaggccgacccagagctctcgaagttcctc
taccagctccacgagacggagaaggaggatctgatccgggaggagcggtcccggagggag
cgagtgcggcagtcccgaatggacactgacctggaaaccatggacctggaccagggtggg
gaggcactggccccgcggcaggttctcgacttggaagacttggtctttacccaggggagc
cacttcatggctaataaacgctgtcagcttccagatggatccttccgtcgccagcgcaag
ggctacgaagaggtgcatgtacctgctctgaagcccaagccctttggctcagaggagcaa
ctgcttccagtggagaagctgcccaagtatgcccaggctggcttcgagggcttcaaaaca
ctgaaccggatccagagtaagctgtaccgggccgccctggagacagatgagaacctgctg
ctgtgtgcccccactggtgccggcaagaccaacgtggctctgatgtgcatgctccgagag
atagggaagcacatcaacatggatggcaccatcaatgtggatgacttcaagatcatctac
atcgctcccatgcggtctttggtgcaggagatggtgggcagctttggaaagcgcctggct
acctacggcatcactgtcgccgagctgacgggtgaccaccagctgtgcaaggaggagatc
agtgccactcagatcattgtctgcacccccgagaagtgggacatcatcacccgcaaaggt
ggcgagcgcacatacacccagctcgtgcggctcatcatcctggatgagatccatctcctt
catgatgacagaggtcctgtcttagaggcgttggtggccagggccatccgaaacattgaa
atgacccaagaggatgtcaggctcatcgggcttagcgccaccctccccaactatgaggac
gtggctacctttctacgcgttgaccctgccaagggccttttctactttgacaacagcttc
cgcccagtgcctctggaacagacctacgtgggtatcacagagaaaaaagccatcaagcgt
ttccagatcatgaatgagatagtctatgagaagatcatggaacatgctggaaaaaatcag
gtactggtgtttgtccattcccggaaggagacggggaagacggccagggccatccgggac
atgtgccttgagaaggacacactgggcctatttctccgagagggctctgcctccaccgag
gtcctgcggacggaagctgagcagtgcaagaacctggagctgaaggaccttctgccctat
ggctttgccattcaccatgcgggcatgaccagggtggacaggacacttgtggaggatctc
tttgctgacaggcacattcaggttttagtctccacagcaactctggcttggggtgtgaac
ctccctgcacacacagttatcatcaaaggcacccaggtgtacagtccggagaaggggcgc
tggacggaactgggggctctggatattctgcagatgctgggacgtgctggaagaccccag
tacgacaccaagggtgaaggcatactcatcacgtctcacggggagctccagtactacctg
tccctcctcaaccagcagcttcctattgagagccagatggtgtcaaagctgcccgacatg
ctcaacgcggaggtggtactgggcaatgtccaaaacgcgaaggatgcggtgaactggttg
ggctatgcctacttgtacatacgcatgctgcggtccccaaccctctacggcatctctcac
gacgatctcaagggagaccccttgctggaccagcgccgactggacctggttcacactgcc
gccttgatgctagataagaacaacctggtcaagtatgacaagaagacgggaaacttccag
gtgacagaactgggtcgtatagccagccactactacatcaccaatgacacggtgcagacc
tacaatcagctgctgaagcccaccttgagtgagatcgagcttttcagggtcttctcgctg
tcctcggagtttaagaacatcaccgtgagagaggaggagaaactggagctgcagaagctg
ctggagcgggtgcccatccctgtgaaggagagcattgaggaacccagtgcgaagatcaat
gtgcttctccaagccttcatctcacagctgaaattggagggctttgcactgatggctgac
atggtatatgtgacacagtcggcgggccggttgatgcgggccatctttgaaattgttctg
aaccgaggttgggcgcagctgacagacaagaccctgaacctctgcaagatgattgacaaa
cgcatgtggcagtccatgtgtcctctgcgtcagttccggaaactccctgaggaggtagtg
aagaagattgagaaaaagaacttcccttttgagcgtctgtacgacctgaaccacaatgag
ataggggagctcatccgcatgcccaagatgggcaagaccatccacaagtacgtccacctg
ttccccaagttggagctgtctgtgcatctgcagcccatcacgcgctccaccttgaaggtg
gagctgaccatcacgccggacttccagtgggatgaaaaggtccatggttcatcagaggcc
ttttggattctggtggaggatgtggacagcgaagtgatactgcaccatgagtactttctg
ctcaaggccaagtacgcccaggacgagcaccttatcacgttcttcgtgcctgtttttgaa
ccgctgccccctcagtacttcatccgtgtggtgtctgaccgctggctctcttgtgagacc
cagctgcctgtctccttccgacacctgatcctgccggagaagtacccgcctcccaccgag
ctgctggacctgcagcccttgcccgtgtccgccctgagaaacagtgccttcgagagcctt
taccaagacaaattcccctttttcaatcccatccagacacaagtgttcaacaccgtgtac
aacagcgacgacaacgtgtttgtgggggcccccaccggcagtgggaagaccatctgtgcg
gagttcgccatcctgcggatgttgctgcagaactcggaggggcgctgcgtctatatcacc
cccatggaggcactggccgagcaggtgtacatggactggcacgagaagttccaggacagg
ctcagcaagaaggtggtgctcctgacgggcgagaccagcacggacctgaagctgctgggc
aagggcagcattgtcattggtacccccgagaggtgggacatcctctctcggcgctggaag
cagcgcaagaatgtccagaacatcagcctgttcgtggtggacgaggcccacctcatcggg
ggcgagaacgggcctgtcttggaagtgatctgctcccggatgcgctacatctcctcccag
attgagcggcccattcgtgttgtggcgcttagctcctcgctctcaaatgctaaggatgtg
gcccactggctaggctgcagtgccacctccacgttcaacttccacccgaacgtgcgcccc
gtgcctttggagctgcacatccagggcttcaacatcagtcacacgcaaactcgcctattg
tccatggccaagccagtgtaccatgccatcaccaagcactctcccaagaagcctgtcatc
gtttttgtgccttctcgtaagcagacccgccttacggcaattgacatcctcaccacgtgt
gcggcggacatccaacgacagaggttcttacactgcaccgagaaggatctgatcccgtac
ctggaaaagctgagtgacagcacgctcaaggagacgctgttaaacggcgtgggctacttg
catgagggtctcagccccttggagcggcgtctggtgggacagctcttcagctcaggggcc
atccaggtagttgttgcttctcggagtctctgctggggcctgagtgtgaccgcccacctg
gtgatcatcatggacacccagtactacaatggcaagatccacgcgtatgtggactacccc
atctatgacgtgcttcagatggtggggcacgccaaccgccctctgcaggatgacgagggg
cgttgtgtcatcatgtgccagggctccaaaaaggatttctttaagaagttcttatatgag
ccattgccagtggagtctcacctggaccactgtatgcatgaccacttcaatgctgagatt
gtcaccaagaccattgagaacaagcaggacgctgtagactaccttacctggacctttctg
taccgccgcatgacgcagaaccccaactactacaacttgcagggcatctcccatcgtcac
ctgtctgaccacttgtcagagctggtggagcagacgctgagtgacctggagcagtccaag
tgcatcagcatagaggacgagatggacgtggcgcctctaaacctgggcatgatcgccgcc
tactactacatcaactacaccactatcgagctcttcagcatgtccctgaatgccaagacc
aaggtgcgtgggctaatcgagatcatctccaacgcagccgagtacgaaaacatcccgatc
cggcaccacgaggacaacctgctgcggcagttggctcagaaggtcccccacaagctgaac
aaccccaagttcaatgacccacatgtcaagaccaatctacttcttcaggctcatctgtcc
cgtatgcagctgagcgctgagctgcagtcagatacagaggagatccttagcaaggccatc
cggctcatccaggcctgtgtggatgtcctctccagcaatgggtggctcagccctgctctg
gcagccatggagctggcccagatggtcacccaagccatgtggtctaaggactcatacctg
aaacagctgcctcatttcacttcggagcacatcaaacgttgcacagacaagggagtggag
agtgttttcgacatcatggagatggaggatgaagaacggaacgcattgcttcagctgtct
gacagccagatggcagacgtggcccgtttctgtaaccgctaccctaacattgagctgtct
tacgaagttgtggataaggacggcatccgcagtggcgggcccgttgtggtgctggtgcag
ttggagcgagaggaggaagtcacaggccccgtgatcgcgcctctcttcccacagaaacgt
gaggagggctggtgggtggtgattggagacgccaagtccaacagccttatctccatcaag
aggctgaccctgcagcagaaggccaaggtgaagcttgactttgtggccccagccactggc
gcccacaactacactctatatttcatgagcgatgcttacatgggatgtgaccaagaatac
aagttcagtgtagatgtgaaagaagccgagacagacagcgactcggattga
DBGET
integrated database retrieval system
