Pteropus vampyrus (Indian flying fox): 120611842
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Entry
120611842 CDS
T07511
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pgig
Pteropus vampyrus (Indian flying fox)
Pathway
pgig03008
Ribosome biogenesis in eukaryotes
pgig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgig00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120611842 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
120611842 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgig03021
]
120611842 (XRN2)
03019 Messenger RNA biogenesis [BR:
pgig03019
]
120611842 (XRN2)
03009 Ribosome biogenesis [BR:
pgig03009
]
120611842 (XRN2)
03016 Transfer RNA biogenesis [BR:
pgig03016
]
120611842 (XRN2)
Transcription machinery [BR:
pgig03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120611842 (XRN2)
Messenger RNA biogenesis [BR:
pgig03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
120611842 (XRN2)
Ribosome biogenesis [BR:
pgig03009
]
Eukaryotic type
Pre-60S particles
RNases
120611842 (XRN2)
Transfer RNA biogenesis [BR:
pgig03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
120611842 (XRN2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
120611842
NCBI-ProteinID:
XP_039730283
UniProt:
A0A6P3QRD1
LinkDB
All DBs
Position
Unknown
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFTPGGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSVSPNTSF
TSDGSPSPLGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEETRRNSLGGDVLFVGKHHLLHDFILQLYQTGSTEPMDVPPELCHGIQG
KFSLDEEAILPDQIVCSPVPMLRDLTQNVAISINFKDPQFAEDYVFKAVMLPGARKPAPV
LKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGTGVYSNAAPPPVT
YQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQRFDRGVVAEPLLPWNRMLQTQ
NAAFQPNQYQMLAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttctttcgctggctcagccgcaagtacccgtccatcattgtcaac
tgcgtggaagagaagccaaaagaatgcaatggtgtaaagattcccgttgatgccagtaaa
cctaatccaaatgatgtggagtttgataatctgtatttggatatgaatggaatcatccat
ccctgtactcatcctgaagacaaaccagcaccaaaaaatgaggatgaaatgatggttgca
atttttgagtacattgacagacttttcaatattgtaaggccaagacgacttctctacatg
gcaatagatggagtggcaccacgggctaaaatgaaccaacagcgttcgaggagattcaga
gcatcaaaagaaggaatggaagcagcagtagagaagcagcgagtcagggaagaaatactg
gcaaaaggtggctttcttcctccagaagaaataaaagagagattcgatagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaatttgacagttattttatctgatgctagtgct
cctggtgaaggagaacataaaatcatggattacattagaagacaaagagctcagcctaac
catgacccaaacactcatcattgcttatgtggagcagatgctgatctcattatgctcggc
cttgctacacacgaacccaattttaccattattagagaagaattcaaaccaaacaaaccc
aaaccgtgtggtctttgtaatcagtttggacatgaggtcaaggactgtgagggtttgcca
agagaaaagaagggaaagcacgatgaacttgcagatagtcttccttgtgcagagggagag
tttatcttccttcgtcttaatgttcttcgtgagtatttggaaagagagctcaccatggcc
agcctaccgttcacatttgatgttgagaggagcattgatgactgggtcttcatgtgcttc
tttgtgggaaatgactttcttcctcacctgccatcattagagattagggaaggtgcaatt
gaccgtttggttaacatatacaaaaatgtggtacacaaaactgggggttaccttacagaa
agtggttatgtcaatctgcaaagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaagagaaaggatgatgaggacagttttagaagacgacagaaagaa
aaaagaaagagaatgaagagagatcaaccagctttcactcctggtggaatattaacccct
catgccttgggttcaagaaattcaccaggttctcaagtagcaagtaatccaagacaagca
gcctatgaaatgaggatgcagaataactctagtccttcagtatctcctaatacgagtttc
acttctgatggctccccatctccattaggaggaattaagcgaaaagcagaagacagtgac
agtgaacctgagccagaggataacgtcaggctgtgggaagctggttggaagcaacggtac
tataaaaacaaatttgatgttgatgcagctgacgagaaatttcgtcgtaaagttgtacaa
tcttacgttgaagggctctgctgggttcttcgatattattaccagggctgtgcttcctgg
aagtggtattatccattccattatgcaccatttgcttcagactttgaaggtattgcagac
atgccttctgattttgagaagggcactaaaccgtttaaaccactggaacaacttatggga
gtttttccagctgcaagtggtaactttctacctccatcatggcggaagctcatgagtgat
cccgattctagtataattgacttctatcctgaagattttgccattgatttgaatgggaaa
aaatatgcatggcaaggtgttgctctgttgccattcgtggatgagcgcagactacgagct
gccctagaagaggtgtacccagacctcaccccagaagaaactagaagaaacagtcttgga
ggcgatgtcttatttgtgggaaaacatcacctactccacgacttcattttacagctgtat
cagacaggttccacagagccaatggatgtaccacctgaactatgtcatgggattcaagga
aagttttccttggatgaagaagccattcttccagatcaaatcgtatgttctcctgttccc
atgttacgggatctgacacagaacgttgcgatcagtattaattttaaagacccacagttt
gctgaagattacgtttttaaagctgtaatgcttccaggagcaagaaaaccagcaccagta
ctgaaacctagtgactgggaaaaatccagcaatggacggcagtggaagccccagcttggc
tttaatcgggaccggcggcctgtccacctggaccaggcagcattcaggactttgggccat
gttatgccgagaggctcaggaactggagtttacagtaatgctgcaccaccacctgtgact
tatcagggaaacttatacaggccgctgttgagaggacaagcccagattccaaaactcatg
tcaaatatgaggccccaggattcctggcgaggtcctcctcctcttttccagcagcaaaga
tttgacagaggcgttgtggctgaacctctgctgccatggaaccgtatgctccaaacccaa
aatgcagccttccagccaaaccagtatcagatgctagctggacctggcgggtatccaccc
agacgcgatgatcgtggagggagacagggatatcccagagaaggaagaaaataccctttg
ccaccaccctcaggaagatacagttggaattag
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