Pteropus vampyrus (Indian flying fox): 120618230
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Entry
120618230 CDS
T07511
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
pgig
Pteropus vampyrus (Indian flying fox)
Pathway
pgig04151
PI3K-Akt signaling pathway
pgig04510
Focal adhesion
pgig04512
ECM-receptor interaction
pgig04518
Integrin signaling
pgig04974
Protein digestion and absorption
pgig05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
pgig00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
120618230 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120618230 (COL2A1)
04518 Integrin signaling
120618230 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120618230 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
120618230 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
120618230 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pgig00536
]
120618230 (COL2A1)
Glycosaminoglycan binding proteins [BR:
pgig00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120618230 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
120618230
NCBI-ProteinID:
XP_039738130
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MIRLGASQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSTDLATASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPVGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGARG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGAPGEKGEPG
DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGPLGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGAREKGPDPLQYMRADQAAGNLRQHDAEVDATLK
SLNNQIESIRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGKTMIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcttgggggcttcccagacgctggtgctgctgacgctactcgtcgccgctgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggatgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcaactgacctcgccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacctggagacatcaaggatattgtaggacccaaagga
ccccctgggcctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgcccctggacctcgtggcagagatggagagcctgggacccctggaaat
cctggcccccctggccctcctggcccccctgggccccctggccttggtggaaactttgct
gcccagatggctggaggatttgatgaaaaggccggtggcgcccagatgggagtaatgcaa
ggaccaatgggccccatgggaccgcgaggacctccaggccctgctggtgctcccggccct
caaggatttcaaggcaaccctggtgaaccaggggaacctggcgtctccggtcccatgggt
ccccgtggtcctcctgggccccctggaaaacctggtgatgatggtgaagctggaaagcct
ggaaaatctggcgaaagaggccctcctggccctcagggtgctcggggcttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggttacccaggcctggatggtgctaagggc
gaagctggtgctccaggtgtgaagggcgagagtggttcccctggtgagaatggttctccg
ggcccaatgggtccccgtggtctgcctggtgagagaggacggactggccctgctggtgcc
gcaggtgcccggggcaacgatggtcagcccggccctgcaggacctccaggtcccgtgggt
cctgccggtggtcctggcttccctggggctcctggtgccaagggcgaagctggtcccacc
ggtgctcgtggtcccgaaggcgctcaaggtcctcgtggtgaacctggcactcctgggtcc
cctgggcctgctggtgcctctggtaaccctggaacagatggaattcctggagccaaagga
tctgctggcgctcctggcattgctggtgctcccggctttcctgggccccgtggtccgccc
ggtccccaaggtgcaactgggcctctgggcccgaaaggtcagacgggtgagcctggtatt
gctggcttcaaaggtgaacaaggcccgaagggagaacctggccctgcaggcccccaagga
gcccctggtcctgctggtgaagaaggcaaaagaggtgcccgtggagagcccggtggtgct
gggcccgtcggtccccctggagaaagaggtgctcctggcaaccgtggtttcccaggtcaa
gatggtctggcaggtcccaagggagcccctggagagcgagggcccagtggccttgctggc
cccaagggagccaatggtgacccaggccgtcccggagagcctggccttcctggagcccgg
ggtctcactggccgccctggtgatgctggtcctcaaggcaaagttggtccttctggagcc
cctggtgaagacggtcgccctggacctccaggtcctcagggggctcgtgggcagcctggt
gtcatgggtttccctggccccaaaggtgccaatggcgagcccgggaaagctggtgagaaa
ggacttcctggcgctcctggtctgagaggtcttcctggcaaagatggtgaaacaggtgcc
gcaggcccccccggacccgctggacctgctggtgaacgaggcgaacagggtgctcctggg
ccatctgggttccagggacttcctggccctcccggtcccccaggtgaaggtggaaaacca
ggtgaccagggtgttcccggtgaagctggagcccccggcctcgtgggtcccagaggagaa
cgagggttcccaggtgaacgcggctctcctggtgcccagggcctccagggtgcccgtggc
ctccccggcacccctggcactgatggtcccaaaggtgcctctggcccagctggcccccct
ggggctcagggccctccaggtctgcaggggatgcccggtgagaggggagcagctggcatc
gctgggccgaagggagacaggggtgatgttggtgagaaaggccccgagggagcccctggg
aaggacggtggacgaggtctgactggtcccattggaccccctggcccggccggtgccaat
ggtgagaagggagaagttggccctcctggtcctgcaggaacagctggtgctcgtggcgcc
ccgggtgaacgtggagagactggaccccctggacctgctggattcgccggtcctcccggt
gctgatggccagccaggggccaagggcgagcaaggagaggctggccagaagggtgacgct
ggcgccccgggtcctcagggcccctctggagctcctgggcctcagggtcctactggtgtg
actggtcctaaaggagccagaggtgctcaaggtcccccgggagccaccggattccccgga
gctgctggccgcgttggacccccaggctccaatggcaaccctggaccccctggtccccct
ggtccttctggaaaagatggtcccaaaggtgctcgaggagacagtggcccccctggtcga
gctggtgaccctggcctccaaggtcctgcaggagcccctggcgagaagggagagcctgga
gatgatggcccctcaggtcccgatggtcctccaggtccccagggtctggctggtcagagg
ggcatcgttggtcttcctgggcagcgtggtgagagaggattccctggcctgcccggccca
tcgggtgagcctggcaagcagggagctcctggcgcatctggagaccgaggtccccctggc
cctgtgggtcctcctggcctgactggtcctgctggtgaacctggacgagagggaagccct
ggtgctgatggcccccctggcagagatggtgcagctggagtcaagggtgatcgtggtgag
actggtcccctgggtgctcctggagcccctgggccccctggctctcctggcccagctggc
ccaactggcaagcagggagaccgaggagaagctggcgcacaaggtcccatgggacccgca
ggaccagctggagcccggggaatcccaggccctcaaggcccccgaggtgataaaggagaa
gctggagaggctggcgagaggggactgaagggacaccgtggcttcaccggtctgcagggt
ctgcccggccctcctggtccttctggagaccaaggtgcttctggtcctgctggcccttct
ggccctagaggtcctcctggccccgtgggtccttctggcaaagatggggctaatggcatc
cctggccccattggacctcccggtccccgtggacgttcaggcgaaacaggccctgctggt
cctcctggaaatcctggaccccctggccctccaggtccccctggtcctggcatcgacatg
tcggcctttgctggcctgggtgcgagagagaaaggccctgaccccctgcagtatatgcgg
gcagaccaggcagctggcaacctgagacagcatgacgccgaggtggatgccacactcaag
tccctcaacaaccagattgagagcatccgcagccctgaaggctcccgcaagaaccctgct
cgcacctgccgggacctgaaactctgccaccctgaatggaagagcggagactactggatt
gaccccaaccagggctgcaccttagacgccatgaaggttttctgcaacatggagactggt
gagacctgcgtctaccccaacccagccagtgttcccaagaagaactggtggagcagcaag
agcaaggacaagaaacatatctggtttggagaaaccatcaacggtggcttccacttcagc
tatggagatgacaacctggctcccaacactgccaacgttcagatgaccttcctgcgcctg
ctgtccaccgagggctcccagaacatcacctaccattgcaagaacagcatcgcctacctg
gatgaagcagctggcaacctcaagaaggccctgctcatccagggctccaacgacgtggag
atccgggctgagggcaacagcaggttcacgtatactgtcctgaaggatggctgcacgaaa
cacaccggtaagtggggcaagactatgatcgagtaccggtcacagaagacctcgcgcctg
cccatcattgacattgcacccatggacataggagggcccgagcaggaatttggtgtggac
atagggcctgtctgcttcttgtaa
DBGET
integrated database retrieval system
