Pteropus vampyrus (Indian flying fox): 120618945
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Entry
120618945 CDS
T07511
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pgig
Pteropus vampyrus (Indian flying fox)
Pathway
pgig03013
Nucleocytoplasmic transport
pgig03015
mRNA surveillance pathway
pgig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pgig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120618945 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
120618945 (DDX39B)
03015 mRNA surveillance pathway
120618945 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgig03019
]
120618945 (DDX39B)
03041 Spliceosome [BR:
pgig03041
]
120618945 (DDX39B)
Enzymes [BR:
pgig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120618945 (DDX39B)
Messenger RNA biogenesis [BR:
pgig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120618945 (DDX39B)
Spliceosome [BR:
pgig03041
]
Complex C
Other components
EJC/TREX
120618945 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120618945 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120618945
NCBI-ProteinID:
XP_039739036
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MRSPCSVMAENDVDNELLDYEDDEVETAAGGDGTEATAKKDVKGSYVSIHSSGFRDFLLK
PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ
VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP
GRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK
EIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIF
VKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDI
ERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISE
LPDEIDISSYIEQTR
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgcgttctccttgttcagttatggcagagaacgatgtggacaatgagctcttggactat
gaagatgatgaagtggagacagcagctgggggagatgggactgaggctactgccaagaag
gacgttaagggctcctacgtctctatccatagctctggctttcgtgacttcctgctcaag
ccagagttgctccgggctattgttgactgtggctttgagcatccatctgaagtccagcat
gagtgcatccctcaggccattctgggaatggatgttctgtgccaggccaaatcaggcatg
ggaaagacagcagtgtttgtgctggccacactgcaacagctggagccagttactgggcag
gtgtctgttctggtgatgtgtcacactcgggagttggcttttcagattagcaaagagtat
gagcgcttctctaaatacatgcccaatgtcaaggtcgcagtgttttttggtggtctgtct
atcaagaaggatgaagaggtgctgaagaagaactgcccgcatatcgtcgtgggaacccct
ggccgcatcctagccctagctcggaataagagcctcaacctcaaacacattaaacacttt
atcttggatgaatgtgataagatgcttgaacagctcgacatgcgtcgggatgtccaggaa
atttttcgcatgaccccccatgagaagcaggtcatgatgttcagtgctaccttgagcaaa
gagatccgtccagtctgccgcaagttcatgcaagacccaatggagatcttcgtggatgat
gagacgaagctaaccctgcatgggttgcagcagtactacgtgaaactgaaggacaacgag
aagaatcggaagctttttgaccttctggatgtccttgagttcaaccaggtggtgatcttt
gtgaagtctgtgcagcgctgcattgccctggcccagctcctcgtggagcagaacttccca
gccattgccatccaccgtgggatgccccaggaggagaggctttctcggtatcagcagttt
aaagattttcaacgacgaattcttgtggcaacaaacctatttggccgaggcatggacatt
gagcgggtgaacattgcatttaactacgacatgcctgaggactctgacacctacctgcat
cgggtggctagagcaggccggtttggcaccaagggtttggccatcacgtttgtgtcagat
gagaatgatgccaagatcctgaatgatgtgcaagatcgctttgaggtcaatattagtgag
ctgcccgatgagatagacatttcttcctacattgaacagacacgatag
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