Pteropus vampyrus (Indian flying fox): 120620416
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Entry
120620416 CDS
T07511
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pgig
Pteropus vampyrus (Indian flying fox)
Pathway
pgig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120620416 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgig03019
]
120620416 (PARN)
Enzymes [BR:
pgig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120620416 (PARN)
Messenger RNA biogenesis [BR:
pgig03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120620416 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
YqeH-like_C
T6PP_C
RRM_1
NCBP3
Motif
Other DBs
NCBI-GeneID:
120620416
NCBI-ProteinID:
XP_039741319
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLDLDPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
VSKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFTPPKV
ESAEDFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPDQVQIAVNTSKYAESYRIQTYAEYVGKKHEEKQIKRKWPEESWKEVERKRIN
TQCVSYALQNHCYRTNSLTATSTVGKRKLSPSQAEAGLESRVSGEFSDPELEQTDSCAES
PSEGRKKAKKFKRMKKDFPLAGSISDSSAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggcggacttctttgccatcgatggggagttttcaggaattagtgacggaccttcagtc
accgcattaacaaatggttttgacactccagaagaaaggtatcagaagcttaagaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatataacaaagtcattcaacttctatgttttcccgaaacccttcaatcgatcc
tcaccagatgtcaaatttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagtttttcgcaatgggattccatatttaaatcaagaagaagaaaga
cagttaagagagcagtatgatgaaaaacgtttacagtccaatggtgcaggagctctgtct
tacgtatctcctaacacgtcaaaatgtcctgtgacgattcctgaggatcagaagaagttt
attgaccaagtggtagagaaaatagaagatttattacaaagtgaagaaaacaagaacttg
gacttagacccatgtaccgggttccaaagaaaactaatttatcagactttgagctggaag
tatcccaaaggcattcatgttgagactttagaaactgaaaagaaagaacgatacatagtt
gtcagcaaagtggatgaagaagaacgtaaaagaagagagcagcagaaacatgctaaagaa
caggaagaactgaacgatgccgtgggattctctagagtcattcatgccattgctaattca
gggaaacttgttattggacacaacatgctcttggatgtcatgcacacagtccatcagttc
tactgccccctgcctgcggacttaaatgaatttaaggagatgacaacatgtgttttcccc
agactcttggatactaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcagaattggaaaagcgattaaaagagacacctttcacccctcctaaagtt
gaaagtgcagaagattttccaagttatgacacagcttctgaacagctccatgaggcaggc
tatgatgcttatatcacaggactgtgttttatctccatggcaaactacctaggttctttt
cttagtcctccaaaaattcatgtgtctgccagatcaaaactcattgaacctttttttaac
aagttatttcttatgagagtcatggatatcccctatctaaacttggaaggaccagacttg
caacctaagcgcgatcatgtcctccatgtgacattccccaaagaatggaaaaccagcgac
ctttaccaacttttcagtgcctttggtaacattcagatatcctggattgatgacacatca
gcatttgtttctctcagccagcctgatcaagtacaaatcgctgtcaataccagcaaatat
gcagaaagctatcggatccagacttatgcagaatatgtgggaaaaaaacatgaggagaag
cagatcaagagaaagtggccagaagagagttggaaggaggttgagagaaagcggataaac
actcagtgcgtgtcctacgctctgcagaatcactgttaccgcaccaacagtcttacagcc
accagcacagtagggaagagaaagctgagtcccagtcaagcagaagctggcttggagtcc
agagtatcgggcgagttttctgaccctgagcttgagcagactgattcctgtgcagaatca
ccctcagagggaaggaaaaaggccaagaaatttaaaagaatgaagaaggactttcctctg
gcaggaagcatctcggacagctctgccaagctctttgaagttcctgacacgtggtaa
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