Panacibacter ginsenosidivorans: FRZ67_05320
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Entry
FRZ67_05320 CDS
T06131
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pgin
Panacibacter ginsenosidivorans
Pathway
pgin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRZ67_05320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgin03019
]
FRZ67_05320
Enzymes [BR:
pgin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FRZ67_05320
Messenger RNA biogenesis [BR:
pgin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FRZ67_05320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_19
CMS1
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QEC66750
UniProt:
A0A5B8V5S1
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All DBs
Position
1278381..1279634
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AA seq
417 aa
AA seq
DB search
MSFNNLQLIEPVLKALSIEGYTKPTPIQEKSIPAILQNKDLLGCAQTGTGKTAAFAIPIL
QLMHQQQQASPQGQRKIKALILTPTRELAIQIEESFKSYGKFLNLKHLVMFGGVSQFNQV
NALRRGVDILVATPGRLLDLLNQRHLTLNDIKFFVLDEADRMLDMGFVHDVKRIIAKLPA
KRQTLFFSATMPQEIQQLANVLLTNPVKVEVTPVSSTVDIIQQSIYFVEKQDKQSLLQHL
LSDRKIGTALVFTQTKHGADRIAKNLNRAGIFTEAIHGNKSQNARQTALENFKNRRTRVL
VATDIAARGIDIDELAHVINFDLPNVPETYVHRIGRTGRAGASGTAFSFCDREEKLLLRD
IQKLINKTIPVVNEHPYHSTSFSNAVPQQVNSRQPSYNSNKNARPAKRYGRPSLQRA
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
gtgtcatttaacaatttacagctaatagagcctgtattaaaggctttaagcattgaaggt
tatacaaaacctacacccatccaggaaaaatctattccagctattttacaaaacaaagac
ctgcttggttgtgcccaaacaggcaccggtaaaacagcagcttttgcaataccgatatta
caattgatgcatcagcaacagcaggcatcaccacaaggtcagcgaaaaataaaagcctta
attcttacgcccactcgtgaactggcaatacagatcgaagaaagttttaagtcgtatgga
aagtttctcaacctgaaacatcttgttatgtttggcggtgtttcacaatttaaccaggta
aatgcattgcgtcgcggtgtagatattttagtagcaacaccgggccgtttacttgatctg
cttaaccagcgtcatcttacgcttaacgatataaagttcttcgtacttgatgaagcagac
cgtatgcttgatatgggttttgtgcacgatgtaaaacgcatcattgccaaacttcctgca
aaaaggcaaacattatttttctctgcaacgatgccacaggaaattcagcaactggcaaat
gttttactgaccaatcctgttaaagtagaggtaacaccagtttcatctaccgttgatatt
attcagcaatccatttattttgtagagaagcaggataaacaatcattgctgcagcatttg
ctcagcgatagaaagatcgggactgcattggtttttacacaaaccaaacatggtgctgac
cgtattgccaaaaacctgaacagggcaggcatttttacagaagctattcatggcaataaa
tctcagaatgcacggcaaactgcattggaaaattttaagaacaggagaacaagagtactt
gttgcaaccgatattgctgcaagaggaattgatatagatgaactggcgcatgtaattaat
tttgatcttcccaatgtgccggaaacttatgtacatcgtattggaagaacaggcagggca
ggtgccagtggtacagctttttctttttgcgacagggaagaaaaattattgttacgcgac
atacaaaagctcattaataaaacaataccagttgttaacgagcacccttaccacagcact
tcatttagcaatgcagtgccgcagcaggttaacagtcgtcagccatcttataatagcaat
aagaacgccagaccggctaaaaggtatggcaggccttcgttgcagcgtgcataa
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