Panacibacter ginsenosidivorans: FRZ67_06110
Help
Entry
FRZ67_06110 CDS
T06131
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pgin
Panacibacter ginsenosidivorans
Brite
KEGG Orthology (KO) [BR:
pgin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pgin03016
]
FRZ67_06110
Enzymes [BR:
pgin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FRZ67_06110
Transfer RNA biogenesis [BR:
pgin03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FRZ67_06110
Prokaryotic type
tRNA splicing ligases
FRZ67_06110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEC66889
UniProt:
A0A5B8V6P8
LinkDB
All DBs
Position
1471887..1473350
Genome browser
AA seq
487 aa
AA seq
DB search
MGKLKITAKELRAIGYPESPVIPVAMNVMEKNYKHHTKEEAMEILKAVLAAPVEYANDAM
LALIAEKLLPKALSFGEGLGEVSLNKEGVHFNIFGADHIEQGALHQMYAAAKLPVAVAGA
LMPDAHHGYGLPIGGVLATENAVIPYGVGVDIGCRMCLSIFDIDTKDLTQREAFFVRELG
EATLFGSGAQFQQSPDHEVMDNKLFFEMPLLKGLHTRAWKQLGSSGSGNHFAEFGIIEID
ETDAVLNVPAGKYVGFVTHSGSRALGANIANHYTRLAISKRRLPQEAKHLAWLTMDEAEG
MEYWLAMNLAGDYASACHHVIHEKIAKQLGRKPMKMVENHHNFAWKEIHDGKKVIVHRKG
ATPAGKDVLGIIPGSMTAPGFIVKGKGSAASINSASHGAGRKMSRTQAMANITHNALKEE
LAKHNVKLLGGGLDEAPFAYKDIEVVMQSQKALVDVVGKFTPKIVKMCGAETNRTRKAGK
RDAVEGE
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagttaaaaataacagccaaagaattgcgtgcaatcggctatcccgaaagcccg
gtgattcctgtggcgatgaatgtgatggaaaaaaattataaacatcacacaaaggaggaa
gcgatggagattttaaaagcagtgcttgctgcgccggtggaatatgccaacgatgcaatg
ttggcgctgattgcagaaaaattactgcctaaagccctctcctttggagagggtttgggt
gaggtctctttgaacaaagaaggcgtccatttcaacatatttggtgcagatcatattgaa
caaggtgcattgcatcaaatgtatgcagcagcaaaattaccggtagcagttgccggtgca
ttaatgcccgatgcccatcacggttatggtttgccgataggcggtgtactggcaacagaa
aatgcggtgataccgtacggcgttggtgttgacattggctgccgtatgtgcctgagcatt
tttgatatcgatacaaaagaccttacgcaacgtgaagcattctttgtgcgtgagctcggc
gaagcaactttgtttggcagcggtgcacagtttcagcaatcgccggatcatgaagtgatg
gacaacaaattattttttgaaatgccattattgaaaggtttgcatacacgtgcatggaaa
cagttgggatcatcaggaagtggtaatcactttgcagagtttggcattattgaaattgat
gaaacagatgctgtgttgaatgtgcctgcaggaaaatatgttggctttgtaacgcatagc
ggttcacgtgcattgggtgcaaacattgccaatcattacacacgactggcaatcagcaaa
cgacgtttgccgcaggaagcaaaacatcttgcatggcttacgatggatgaagcggaaggc
atggaatactggctggctatgaatttggcgggtgattatgcaagcgcttgtcaccacgtg
atacatgaaaagattgcaaagcagttgggtcgcaagccaatgaagatggtggagaaccat
cacaactttgcatggaaagaaatccatgatggcaagaaagtaatcgtgcatcgcaaaggt
gccacgcctgcgggtaaagatgtgctgggtattattcccggcagtatgacggcacctggc
tttattgtaaaaggcaaaggttcagcggcgagcatcaactccgcatcgcatggtgccggc
agaaagatgagtcgtacacaagccatggcaaacattacgcacaatgcattgaaagaagaa
ctcgccaaacacaatgtaaaattgctcggcggcggtttggatgaagcgccttttgcatac
aaggatattgaagtcgtaatgcaatcgcagaaagcattggttgatgtggtgggcaagttc
acgccaaagattgtaaagatgtgtggtgcggaaaccaatagaacaagaaaggcgggtaag
agagatgcggtggaaggagaataa
DBGET
integrated database retrieval system
