Panacibacter ginsenosidivorans: FRZ67_12875
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Entry
FRZ67_12875 CDS
T06131
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pgin
Panacibacter ginsenosidivorans
Pathway
pgin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRZ67_12875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgin03021
]
FRZ67_12875
03019 Messenger RNA biogenesis [BR:
pgin03019
]
FRZ67_12875
Transcription machinery [BR:
pgin03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FRZ67_12875
Messenger RNA biogenesis [BR:
pgin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FRZ67_12875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
OB_RNB
AAA_22
Mor
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
QEC68149
UniProt:
A0A5B8VA46
LinkDB
All DBs
Position
complement(3048903..3050567)
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AA seq
554 aa
AA seq
DB search
MYDILQLNDMLVPELLDIADQLSIPHAKKADKQELIYKILDKQALTSGEAAKNGAEKPKR
KRIIKANTANVTEEAEVINEPETTANTDAADVAKDDKKKRGRKPKEKEEAESADAKPPVK
PEKPAPVELDLPDLEMGSRLISMLGDDEPLILDDDPVDLMDEVEEVAAPKTYSSKKEPAF
NIEFDGIIQAEGVLEMMPDGYGFLRSSDYNYLSSPDDIYVSPSQIKLFGLKTGDTVFGAV
RPPKEGEKYFALLKVESINGKSPEEVRDRVPFDYLTPLFPFEKLNLFTTPSNYSTRIMDL
FTPIGKGQRGLIVAQPKVGKTMLLKEVANAIAANHPECYLMVVLIDERPEEVTDMERSVK
AEVIASTFDEPAEKHVKVSTVALQKAKRLVECGHDVVILLDSITRLARAHNTVAPASGKV
LSGGVEANAMQKPKQFFGAARKIEHGGSLTILATALIETGSKMDEVIFEEFKGTGNMELV
LDRRLGNKRIYPAIDLVASSTRRDDLLLDREVLARMNILRLYINDMNTEEAMSELLKRMR
GTKSNEEFLASMNG
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacattctgcaattgaacgacatgctggtgcctgaattgctcgacatcgctgat
caactaagcatccctcatgctaaaaaagccgataaacaggaacttatttataagatcctt
gacaaacaggctcttacatcaggagaagcagctaaaaacggtgctgaaaaaccaaagcgt
aaacgcattattaaagcaaatacagccaacgtaactgaggaggctgaagttataaatgaa
cctgaaacaactgcaaatactgatgcagctgatgttgctaaagacgacaaaaagaaaagg
gggcgcaaacccaaagaaaaagaggaagcagaaagtgcagatgcaaaaccacctgtaaaa
cccgagaaaccagctccagtagagctagatctccctgaccttgaaatggggagcaggttg
ataagcatgctgggtgatgatgaacctttaatactcgatgatgatcctgttgatctcatg
gatgaggtggaagaagtagcagctcctaaaacttatagtagcaagaaggagcccgctttt
aatattgaattcgatggaattatacaggcagaaggtgtattggaaatgatgcctgatggc
tatggattcctgcgctcctccgattacaattatctttcttcgcctgatgatatttatgtc
tctccttcacaaataaaattattcggtttaaaaaccggtgatactgtttttggtgcagtg
cgtcctccaaaagaaggtgaaaaatattttgcattgctgaaggttgagagtattaatgga
aaaagtcctgaagaagtaagagacagggtaccatttgattatttaactccactattccca
tttgagaaacttaacctgttcaccactccatctaattacagtaccaggatcatggacctt
tttacaccaatcggtaaaggtcagcgtggtttgatagtagcccagccaaaggttggtaaa
acaatgttacttaaagaagtagcgaatgctattgcagctaatcaccctgagtgctattta
atggtagtgcttatagatgaacgtccggaagaggttactgatatggaacgcagtgtaaaa
gcagaagtaattgcttctacttttgatgaacccgcagaaaagcacgttaaagtttctact
gttgctttacaaaaagcaaaacgtttggtagagtgtggccatgatgtggtgatattgctt
gattcaattacccgtttggcccgtgcacacaatacagtagcacctgcaagtggcaaggtt
ttaagtggaggtgtggaagctaatgcaatgcaaaaacctaaacagttctttggtgcagcc
cgtaaaattgaacacggcggatcattaactattcttgcaacagcgcttattgaaaccggt
agtaaaatggacgaggtgatttttgaagagttcaaaggcaccggtaacatggaacttgtt
ctcgatcgcagattgggcaacaaacgtatctatccggccatcgatcttgtggcctcatct
acccgtcgtgatgatttgttattagacagagaagtcttggcaagaatgaatattctccgt
ctttatatcaacgatatgaacacagaagaagcaatgtctgaattattgaaacgtatgcgt
ggcaccaagagcaacgaagagtttcttgccagcatgaatggataa
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