Panacibacter ginsenosidivorans: FRZ67_16505
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Entry
FRZ67_16505 CDS
T06131
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
pgin
Panacibacter ginsenosidivorans
Pathway
pgin00470
D-Amino acid metabolism
pgin00550
Peptidoglycan biosynthesis
pgin01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pgin00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
FRZ67_16505 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
FRZ67_16505 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pgin01011
]
FRZ67_16505 (murD)
Enzymes [BR:
pgin01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
FRZ67_16505 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
pgin01011
]
Precursor biosynthesis
Amino acid ligase
FRZ67_16505 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD_N
MurD-like_N
Motif
Other DBs
NCBI-ProteinID:
QEC68830
UniProt:
A0A5B8VBF8
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All DBs
Position
3935087..3936487
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AA seq
466 aa
AA seq
DB search
MANNGTNKNADVLQSSPLGAGGRQRLVILGSGESGVGAALLGKQKGYDVFVSDGGMLKAN
YKQELIDNGIDFEEGGHTTEKILSADEIVKSPGIPEKNELVKKIRAKGIPMISEIELAYR
FKGDSKIVAITGSNGKSTTTSLIYHICKSAGLDCALVGNIGYSFAKQVAEDPKPLYVAEI
SSFQLDDIKDFRPDIAILLNITEDHLDRYDYKFENYINSKFKIIENQQQEDYFIYCLDDE
VITKHLENINLQTNPLPFSMRQELNKGAWIKGDQMMLKVQEERMSMSIYDFALKGKHNQY
NTMAAGIATATLGIRKERIRDSMADFHSLEHRMEHVATVRGVEFINDSKATNMNSTWYAL
ESMRKPTVLILGGVDKGNDYSEIEELVREKVKAIVCLGIDNTKIHEAFRMIAPVLDTDNA
IDCVKQSFRLAEKGDVVLLSPACASFDLFKNYEDRGKQFKDAVKEL
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaacaatggaacaaataaaaatgctgatgttctccaaagctcccctttaggggcg
ggggggcgtcaacgtcttgttattcttggttcgggggaaagcggtgttggtgcagcattg
ttaggaaaacaaaaagggtacgatgtttttgtaagcgatggcgggatgttgaaagcaaat
tataaacaagagctcattgacaatggaattgattttgaagaaggcggacatacaacagaa
aaaattctgagcgcagatgaaatagtgaagagtcccggtattcctgaaaagaatgaactc
gtgaaaaagataagagcaaaaggaattcctatgatcagcgagatagagctggcatatcgt
tttaaaggtgatagtaaaattgttgcaatcaccggcagtaatggtaaaagcacaacaaca
tctctcatttatcacatctgtaaatcggctggtcttgattgtgcattggttggcaacatc
ggttattcgtttgcgaaacaagttgcagaagatccaaagccattgtatgtagcagaaata
agttcatttcaattagacgatataaaagatttcaggccggatatagcaatactcttaaac
ataacagaagatcatttagacaggtacgattacaaatttgaaaattatatcaacagcaag
tttaagatcattgaaaaccaacagcaggaagattatttcatttattgtttagacgatgaa
gtgatcacgaaacatttagaaaacataaatctccaaactaacccattgccattttctatg
agacaagaattaaacaaaggagcctggataaaaggcgaccagatgatgctgaaagtacag
gaagaacgtatgagcatgagtatctatgattttgcattaaagggtaaacacaaccagtat
aacacaatggcagcaggtattgcaaccgccacgcttggcatacggaaggaaaggatacgt
gattctatggctgactttcacagccttgaacacaggatggaacatgtggcaactgtgcgt
ggtgtggaattcattaatgatagtaaggccacaaatatgaatagtacctggtatgctttg
gagagtatgagaaaacctaccgtgcttattcttggaggcgttgacaaaggcaatgattac
agtgagattgaagaattggttagagagaaagtaaaagcaatagtttgtttgggaattgat
aatacaaagattcatgaggccttcagaatgatagcaccagtattggatacagacaatgcg
attgattgtgtaaagcaatctttccgtttagcagaaaaaggagatgtagtgttattaagc
cctgcatgtgcaagctttgatctctttaaaaattatgaagaccgcgggaagcaatttaag
gatgcagtaaaagaattataa
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