Panacibacter ginsenosidivorans: FRZ67_20960
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Entry
FRZ67_20960 CDS
T06131
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pgin
Panacibacter ginsenosidivorans
Pathway
pgin03030
DNA replication
pgin03430
Mismatch repair
pgin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FRZ67_20960 (dnaE)
03430 Mismatch repair
FRZ67_20960 (dnaE)
03440 Homologous recombination
FRZ67_20960 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgin03032
]
FRZ67_20960 (dnaE)
03400 DNA repair and recombination proteins [BR:
pgin03400
]
FRZ67_20960 (dnaE)
Enzymes [BR:
pgin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FRZ67_20960 (dnaE)
DNA replication proteins [BR:
pgin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FRZ67_20960 (dnaE)
DNA repair and recombination proteins [BR:
pgin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FRZ67_20960 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
SSB
WWE_1
Motif
Other DBs
NCBI-ProteinID:
QEC69652
UniProt:
A0A5B8VEA4
LinkDB
All DBs
Position
complement(4933142..4936819)
Genome browser
AA seq
1225 aa
AA seq
DB search
MQFSHLHVHTQYSLLDGAAGISDLYKKAGKLGMPALAITDHGNMFGVFEFVKQAWNNTKV
VGKTADGKDILEPVVKPIVGCEFYVVKDRHRKTFSKEQKDERYHQVLLAKNKQGYANLVK
LTSLGFIEGMYSKYPRIDKELIEKYHEGLIATTCCIGAYVPQTILHDGEASAETEFKWWL
DLFGEDYYIELQRHNIKEQEIINNTLLKFAKKYNVPVIATNDSHYTDKDDYNAHDILLCI
NTGEKQSTPGFDDFVNDDIALKNRRFKFPNDQFYFKTQDEMAELFNDVPQALDNTQAIVD
KIEVLNLKKDILLPAFPIPKEFQSSDDSNLNQWNYLHHLTYEGARQRYSEITEEIRERLD
FELFTIKTMGFAGYFLIVSDFIKAGRDMGVFVGPGRGSAAGSVVAFCVGITNIDPIKYNL
LFERFLNPDRKSMPDIDTDFDDEGRQKVIDYVVHKYGKNQVAQIITYGTMAAKMSIKDVA
RVMDLPLSESNALAKMVPDRPGTDLGRVLTAPFTAKDAKEGQKSLEDKEGYGGEELENIK
RLREIYHGTDIRAQVLHEAERLEGSVRNTGVHAAGIIIAPSDLTDLIPVAVAKDSDLWVT
QIEGSTIEEAGVLKMDFLGLKTLSILKTALFLIKQNHNIDIDLDNIALDDEKTFLLYQRG
ETNGTFQFESPGMQKYLRELKPDKFADLIAMNALYRPGPMAYIPKYVARKHGREEVTYDL
DVMKEYLEETYGITVYQEQVMLLSQSIAGFSKGDADVLRKAMGKKDRKTLDKMKGKFMDG
AVAKGHNKDILEKVWTDWEAFAQYAFNKSHSTCYGLVAYQTGYLKAHYPSEYMAAVLNHA
GAIEKITFFMEECKRMGLKVLGPDINESLKGFAVNKKGEIRFGLGGLKGVGEAAIEGLIE
ERNKGGHYKDIFDLIKRVNQRTVNKKSLESLAYAGAFDCFKEIHRAQYFYIAQGEPLTGI
EKIIRFGNVFQTNKSQSVNSLFGDSVMPEIATPKLPACEEWTLTEKLDYEKEVTGMFMSG
HPLDHFKFELRYYGIMNLADFNEVKDSPTLIAANANRNFRIAGLVTDGQHRVTKTGRQFG
SLTIEDFSSKTEIMLWSDDYVKFQNYLEKGNNLLINGFFKQRYNSDQYEFKVTTMMLLET
AKQALTRQIEINITPASVTKDFVNFIDSNVKANPGKHSLRFNVYDPLENLKITMYTLEKG
FTMNEEMAEYLMTNPDVEINVGLAG
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgcaattctcacacttacacgtacacacacaatattccttgctcgatggtgccgcaggc
attagtgacctttataaaaaagcaggtaagcttggtatgcctgcattggctattaccgat
catggcaatatgtttggcgtgtttgaatttgtaaaacaggcatggaacaatacaaaggtc
gttggtaaaaccgctgatggaaaagatattcttgaacccgttgtaaagccaattgttggt
tgcgaattttatgtggtaaaagatcgtcaccgtaaaacattttccaaagaacaaaaagat
gaacgttaccaccaggtattgctggcaaaaaataaacagggttatgcgaatttggtaaaa
cttacttcgcttggttttattgaaggcatgtacagcaaatatccacgcattgataaagag
ctaattgaaaaatatcatgaaggtttgatagcaacaacatgctgcattggtgcttatgtg
ccccaaactattttgcatgatggagaagcgtctgctgaaacagaattcaaatggtggctg
gatttgtttggtgaagattactatatagaactgcagcgccataacataaaagaacaggag
atcatcaacaacacattattgaagttcgcaaaaaaatacaatgtgccggtgattgcaacg
aatgacagccactatacagataaagacgattataatgcgcatgatattttgctttgcatc
aacactggtgaaaaacaaagtacgccgggctttgatgattttgtaaatgatgatattgca
ttaaagaaccgtcgttttaaatttcctaacgatcagttctattttaaaacgcaggatgaa
atggcagaactcttcaatgatgttccgcaagcattagataatactcaagccatcgttgat
aaaatagaagtattaaatctcaagaaagatattttgcttcctgcgtttcctattccaaaa
gaatttcaatcaagtgatgacagcaaccttaaccaatggaattatctacatcacctaaca
tacgaaggtgcaagacaacgttacagcgaaataacagaagagataagagaacgtctagac
ttcgagttatttacgatcaagacaatgggcttcgcaggttacttcttaattgtaagtgac
ttcataaaagccggtcgtgatatgggcgtattcgttggccccggccgtggttctgcagct
ggtagtgtggtagctttttgtgtcggcattacgaatattgatcctatcaaatacaatttg
ctatttgaaagatttttaaatcctgatcgtaagtcaatgccggatattgataccgacttt
gatgatgaaggtcgtcaaaaagtgattgactatgtggtgcacaaatatggaaagaaccag
gttgcacagatcatcacttatggtacgatggctgcaaagatgagcatcaaagatgtggca
cgtgtaatggatcttccgctaagtgaaagcaatgcattggcaaagatggttcccgacaga
ccgggcacagatcttggccgtgtgctcactgcaccattcactgcgaaagatgcaaaagaa
ggacaaaaatctttggaagataaagaaggttatggtggcgaagaattagaaaatattaaa
cgtcttcgtgagatatatcatggtactgacattcgtgcccaggtattacatgaagcagaa
cgattggaaggttctgtacgcaataccggtgtgcatgctgcaggtatcatcattgcacca
agcgatcttactgatcttattcccgttgctgttgccaaagactctgatctttgggttaca
caaattgaaggcagcaccattgaagaagcaggtgtgttaaaaatggactttcttgggttg
aaaacattatccattttaaagactgcattgtttctcatcaaacaaaatcataacatagat
attgatcttgataatatagcattggatgatgaaaaaacttttcttttataccaacgtggc
gaaacaaatggtacgttccagtttgaaagtccaggtatgcaaaaatatttgcgtgaacta
aagcccgataagttcgccgatctcattgcaatgaacgccttgtaccgtccaggcccgatg
gcatacattccaaaatatgttgcacgcaaacacggccgcgaagaagtgacttatgatctt
gatgtgatgaaagaatacctcgaagaaacttatggcatcaccgtttaccaggaacaggta
atgttgttgagtcaaagtattgcaggtttctctaaaggcgatgcagatgtactccgtaaa
gcaatgggtaagaaagaccgcaagacgcttgataaaatgaaaggcaagttcatggatggc
gctgttgcaaaaggccacaacaaagacatacttgaaaaagtatggactgactgggaagcc
tttgcacaatatgcattcaacaaatcgcactctacctgttatggtttggtggcttatcaa
acaggttatttaaaagcacattaccccagcgaatatatggccgctgtgttgaaccacgca
ggcgctattgaaaagatcaccttctttatggaagagtgcaaacgcatgggtttaaaagta
ctcggaccagacatcaacgaatcactaaaaggttttgcggtaaataaaaaaggtgagatc
cgttttggtctcggtggtttaaaaggtgttggtgaagctgctattgagggccttattgaa
gaacgtaataaaggcggccactacaaagatatttttgatctcatcaaacgtgttaatcaa
cgtacggtaaataaaaaatctttggaaagtcttgcgtatgcaggcgctttcgattgtttc
aaagagattcaccgtgcacaatatttttatatagcacaaggcgagccgcttacaggcatt
gaaaaaattattcgttttggaaatgtttttcaaaccaacaaaagccaaagtgtaaacagt
ctctttggtgacagtgtaatgccggagatcgctacaccaaaattaccagcctgtgaagaa
tggacacttactgaaaaactcgattacgaaaaagaggtcaccggcatgttcatgagcggc
cacccgctcgatcattttaaattcgagctgcgttattatggcattatgaaccttgccgat
tttaatgaagtaaaagattctcccacactcatagcagccaatgccaaccgcaatttccgc
attgcaggtttggttaccgatgggcagcaccgcgtaacaaaaacgggccgacagtttggt
tcgcttaccatagaagatttcagcagcaaaacagagatcatgttgtggagcgatgactat
gtaaagtttcaaaactatctcgaaaaaggaaacaacttactcatcaatggtttttttaaa
cagcgctacaacagcgaccaatacgagtttaaagtcaccaccatgatgttgctcgaaacc
gccaagcaggcgctcacacggcaaatagaaattaatattacacccgcatctgtaacaaaa
gattttgtaaactttatagacagcaacgtaaaagccaatccaggcaagcattccctgcgt
ttcaatgtatacgaccctttggaaaatttgaaaataaccatgtacacattagaaaaaggt
tttaccatgaacgaagaaatggccgagtatttaatgaccaaccctgatgtagagattaat
gtgggactggcggggtaa
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