Paraburkholderia ginsengisoli: I6I06_04715
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Entry
I6I06_04715 CDS
T07246
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pgis
Paraburkholderia ginsengisoli
Brite
KEGG Orthology (KO) [BR:
pgis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pgis03009
]
I6I06_04715 (rlmD)
Enzymes [BR:
pgis01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
I6I06_04715 (rlmD)
Ribosome biogenesis [BR:
pgis03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
I6I06_04715 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_31
RrnaAD
Methyltransf_23
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_15
TRAM
Methyltrans_SAM
MTS
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
QQC64783
UniProt:
A0A7T4N3X3
LinkDB
All DBs
Position
1:complement(1083502..1084932)
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AA seq
476 aa
AA seq
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MSRTAPHRRSPKRPSKYHKGPPPASTPVITGNEPVIEIVSLDMEARGVGRVESEDGTPGK
VIFVEGALPGERVSYSTHRSKPKFEQAEVVQVFRESVIRTKPKCTHFDICGGCSMQHLDI
RAQVAVKQRVLEDNLQHLAKLRPETVFRPIHGPAWGYRYRARLAVRFLPEKGGMRIGFHE
KKSSYIADMKTCEVLPPHVSAMLMPLRFMVRKLSIYDRMPQLELAVGSSVTALVVRNLEP
ITAADEQVLRDFADEHKVQFWLQPGGPDTVTPFYPLDVQLDYTLPEYNIRMPFKPTDFTQ
VNHAINRVLISRALRLLAPARTDRVLDLFCGIGNFTLPLARVAKEVVGIEGSEVLTTRAL
ANAELNGVAGHTSFACRNLFEVTADDVRALGHFDKSLIDPPREGALAVAKALAEIAQSGD
GPLPKRIVYVSCAPATLARDSGLLVHEAGYRLVGAGVVNMFPHTSHVESIALFERD
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccgaactgccccccatcgtcgctcgccgaagcgcccttcgaagtaccacaaggga
ccgccgccggcatcaacgcccgtcatcaccggcaatgaaccggtcatcgaaatcgtttcg
ctcgatatggaagcgcgcggcgtcggccgcgttgagagtgaagacggcacgcccggcaag
gtgattttcgtcgaaggcgcattgcccggcgaacgcgtcagctactcgactcatcgcagc
aagccgaaattcgagcaggccgaagtcgttcaggtgttccgcgaaagcgtgattcgcaca
aagccgaaatgcactcacttcgatatctgcggcggctgttcgatgcagcatctggatatc
cgcgcgcaggtcgccgtcaagcagcgcgtgcttgaagacaaccttcagcatctcgcgaag
ctgcgccccgaaacggtgttccggccgattcacggaccggcgtgggggtatcgctatcgt
gcgcgtctggccgtgcgtttcctgccggagaagggcggcatgcgcatcggctttcacgag
aagaagagcagctacatcgccgacatgaagacttgcgaagtgctgccgccgcatgtgtcg
gcgatgctgatgccgctgcggttcatggtgcgcaagctgtcgatctacgaccgcatgccg
cagctcgaactggcggtcggctcatcggtgacggcgctggtggtgcgcaatcttgaaccg
atcaccgccgccgacgaacaggtgctgcgcgatttcgccgacgagcacaaggtgcagttc
tggctgcagccgggcggcccggacacggtgacgccgttctatccgctcgacgtgcaactc
gactacacgctgccggaatacaacatccgcatgccgttcaagccgaccgatttcacgcag
gtgaaccacgcgatcaaccgcgtgctgatcagccgcgcattgcgcctgctggcgccggca
cgcaccgatcgtgtgcttgatctgttctgcgggatcggcaacttcacgctgccgctcgcg
cgcgtcgcgaaggaagtggtgggcattgaaggcagcgaagtgttgaccacgcgggcgctc
gccaatgccgaactgaacggcgtagcagggcacacgtcgttcgcatgccgcaatctgttc
gaggtcaccgccgacgatgtccgcgcgctcggtcatttcgacaagtccctcatcgacccg
ccgcgcgaaggcgcgctcgccgtcgcgaaggcgctggcggaaatcgcgcagagcggcgac
gggccgctgcccaagcgcatcgtctacgtgtcgtgcgctccggcgacgctcgcgcgcgat
tcggggctgctcgtgcacgaggccggctaccggctggtcggtgcgggcgtggtgaacatg
ttcccgcatacgtcgcacgtggagtcgatcgcgttgttcgagcgggactga
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