Paraburkholderia ginsengisoli: I6I06_07220
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Entry
I6I06_07220 CDS
T07246
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pgis
Paraburkholderia ginsengisoli
Pathway
pgis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6I06_07220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgis03019
]
I6I06_07220
Enzymes [BR:
pgis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6I06_07220
Messenger RNA biogenesis [BR:
pgis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6I06_07220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Fe-ADH
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QQC65239
UniProt:
A0A7T4T9X5
LinkDB
All DBs
Position
1:complement(1636061..1637545)
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AA seq
494 aa
AA seq
DB search
MSDTAVTPSTATFDQFGLAPDILKAVKESGYTTPTPIQEQAIPVVLAGRDVMGAAQTGTG
KTASFSLPIIQRLLPQASTSASPARHPVRALILTPTRELADQVAANVQSYAKHTALRSAV
VFGGVDMNPQSEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQIVFEVA
EGDKTGAVVQLIRERSLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRPLDVQHLTVAAPVRHHHEERAPRRERSSDGREGRDERGSRRR
TGAPSSGSFDRPHHHRAQPVDDFFLKPYEPSPSSVRKVEEAAAASGAPQKSGSKQPLAAL
LGGFGMPRKSTSSS
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacacagccgtcacgcccagcactgcgacttttgatcaattcggtctcgcgccc
gacatcctgaaagccgtcaaagaatcgggctacaccacgccaacgccgatccaggagcag
gcgattcccgtcgtgctggccggccgtgacgtgatgggcgccgcgcagaccggcaccggc
aagaccgcgagtttctcgctgccgatcatccagcgtctgctgccgcaggcgagcacgagc
gcgtcgcccgcgcgccatccggtgcgtgcgctgatcctcacgccgacccgcgaactggcc
gaccaggtcgccgcgaacgtgcagtcgtacgcgaagcacaccgcgctgcgcagcgcggtg
gtgttcggcggcgtcgatatgaatccgcagtccgagcaactgcgccgcggcgtcgaaatc
ctgatcgccacgccgggccgtctgctcgatcacgtgcaacagaaaaccgcgaatctcggc
caggtgcagattctcgtgctcgacgaagccgaccggatgctcgacatgggcttcctgccg
gacctgcagcgcatcctgaacctgctgccgaaggaacgtcagacgctgctgttctcggcc
acgttctcgggcgaaatcaagaagctggccgccacgtatctgcgcaacccgcagaccatc
gaagtcgcgcgcagcaactcgaccgcgaccaacgtgacgcagatcgtcttcgaagtcgcc
gagggcgacaagaccggcgcggtcgtgcaactgatccgtgagcgcagcctcaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccgtctcgcgcgcagtctcgaacgcgac
ggcgtggtggcgaccgcgattcacggcgaccgcacgcagaacgagcgcatgcaggcgctc
gacgcgttcaagcgcggcgagatcgaagcgctggtcgcgaccgacgtcgccgcgcgcggc
ctggatatcgccgaactgccggccgtgatcaacttcgacctgccgttcaacgcggaagac
tacgtgcaccgcatcggccgtaccggccgtgctggagcgtcgggcgatgcgttgtcgctg
tgcagcccgaacgagcgcaagcaactcgccgatatcgaaaagctgatcaagcgtccgctg
gacgtgcaacacctgaccgtcgccgcgccggttcgtcatcaccacgaagagcgtgcgccg
cgccgcgagcgcagcagtgacggccgtgaaggtcgtgatgagcgcggcagccgccgtcgc
acgggcgcgccgtcgtcgggttcgttcgaccggccgcatcaccatcgcgcgcaacccgtc
gatgatttcttcctgaagccgtatgagccgtcgccgtcttcggtgcgcaaggtcgaggaa
gcggctgccgcttccggtgcgccgcagaagtcgggctcgaagcagccgctggcggcattg
ctgggcgggttcgggatgccgaggaagtcgacttcctcgtcgtaa
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