Paraburkholderia ginsengisoli: I6I06_13160
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Entry
I6I06_13160 CDS
T07246
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pgis
Paraburkholderia ginsengisoli
Pathway
pgis03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pgis00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I6I06_13160 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgis03021
]
I6I06_13160 (rpoC)
03400 DNA repair and recombination proteins [BR:
pgis03400
]
I6I06_13160 (rpoC)
Enzymes [BR:
pgis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I6I06_13160 (rpoC)
Transcription machinery [BR:
pgis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I6I06_13160 (rpoC)
DNA repair and recombination proteins [BR:
pgis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I6I06_13160 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
PYNP_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
QQC63240
UniProt:
A0A7T4T7V3
LinkDB
All DBs
Position
1:2979658..2983896
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVEMLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLTFTGVSEALRAYENK
EVELASRVNVRITEMVHNEDKSEGAPAFVPKITLYATTVGRAILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVTVADVVNPESQETLYETGTLLDEDAVEEIERLGIDEVRVRTPLTCETRYGLC
AACYGRDLGRGSSVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTATMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKT
VRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGVEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKSKEL
SDRERFDQIAAEESFEFGTPETPAAEQQHSGE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctattcaagcaagtccaacaacctgaagtttttgacgcgatc
aagatcggtctggcctcgccggacaagatccgttcgtggtcgttcggtgaagtgaagaag
ccggaaaccatcaactatcggacgttcaagccggaacgcgatggtctgttctgcgcgaag
attttcgggccgatcaaggactacgaatgcctttgcggtaagtacaagcgcctgaagcac
cgtggcgtgatctgcgagaagtgcggcgtcgaagtgacgctggcgaaggtgcgtcgcgaa
cggatgggccacattgaattggcctcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgtgacatcgaacgcgtgctgtac
ttcgaagcatatgtggtgatcgatccgggcatgacgccgctgaaagcgcggcagatcatg
accgaagaggattactacaataaggtcgaagagtacggtgacgaattccgtgccgagatg
ggcgcggaaggcgttcgcgagctgctgcgcgcgatcaacatcgacgaacaggtcgagatg
ctccgtaccgaactcaagaacacgggttcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtgctcgaggctttccagcgttcgggcatcaagcccgattggatggtgctcgaa
gtgttgccggtgctgccgccggaactgcgtccgctggtgccgctggacggcggccgtttt
gcgacgtcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgaactgaaggcgcctgaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagctgtcgattcgctgctcgacaacggccgtcgcggtaaggcgatgaccggcgcgaac
aagcgtccgctgaagtcgctcgctgacatgatcaagggtaagggcggtcgtttccgtcag
aacctgctcggtaagcgtgtggactactcgggccgttcggtgatcgtggtcggcccgacg
ctcaagctgcatcagtgcggtctgccgaagctgatggcgctcgaactgttcaagccgttc
atcttcaacaagctcgaagtgatgggtgtcgctaccaccatcaaggctgcgaagaaggaa
gtcgagaaccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgaacatccg
gtcatgctgaaccgtgcgccgacgctgcaccgtcttggcattcaggctttcgagccggtg
ctgatcgaaggtaaggcaatccagctgcacccgctcgtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggctgttcacgtgccgctgtcgctggaagcgcagatggaagcg
cgcacgctgatgctggcgtcgaacaacgtcctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggcttgtactacgcgacgcgtgaagccgtgaatgcg
aagggcgaaggcctgacgttcaccggcgtctcggaagcgctgcgtgcatacgagaacaag
gaagtcgagctcgcctcgcgcgtcaacgtgcggatcacggaaatggtccacaacgaagat
aagtcggaaggcgcgccggcgttcgtgccgaagatcacgctgtacgcgacgaccgtcggc
cgtgcaatcctgtcggaaattctgccgccgggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgtctgatcaacaccgcattccgcaagtgcggtctgcgc
gaaacggtgatttttgccgaccagttgatgcagtcgggtttccgtctggcaacgcgcgct
ggtatctcgatctgcgtcgacgacatgctcgtgccgccgcagaaggaaaccatcgtcggc
gacgccgcgaagaaggtgaaggaatacgaccgtcagtacatgtcgggtctcgtcacgtcg
caagagcgctacaacaacgtggtcgacatctggtcggcaacgtcggaagcggtcggcaag
gcgatgatggagcagctgtcgacggaaccggtcacggaccgcgacggcaacgaaacgcgt
caggaatcgttcaactcgatttacatgatggcggactcgggtgctcgtggttcggcggtt
cagattcgtcagctggccggtatgcgtggcctgatggcgaagccggacggctcgatcatc
gaaacgccgattacggcgaacttccgtgaaggcctgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagacggcgaactcgggttac
ctgacgcgacgtctggtcgacgtgacgcaggatctcgtggtggtcgaggacgattgtggt
acgtccaacggcgtcgcgatgaaggcgttggtcgaaggcggtgaagtcgtcgaagcgctg
cgtgaccgtatcctcggtcgcgtgacggtggctgatgtcgtcaatccggaatcgcaggaa
acgctgtacgaaacgggcacgttgctcgacgaagatgcggtcgaagaaatcgaacgcctc
ggcatcgacgaagtgcgcgtgcgtacgccgctgacttgcgaaacgcgttacggtctgtgc
gcagcctgctacggccgcgacctgggccgcggctcgtcggtcaacgtcggtgaagcagtc
ggcgtgatcgctgcgcagtcgatcggtgagccgggcacgcagctcacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcggcagtggcttcgtcggttgaagcgaagtcgaac
ggtacggtgcgtttcacggcgacgatgcgttacgtcaccaacgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaagcgatgatcaccgacgaccacggtcgcgagcgcgaacgt
cacaaggtgccgtacggcgcgacgctgttgcaactggacggcgcgcagatcaaggccggc
acgcaattggcgacgtgggacccgatgacgcgtccgatcatcaccgagtacggtggtacg
gtgaagttcgaaaacgtcgaagaaggcgtgaccgttgcgaagcagatcgacgatgtgacg
ggtctgtcgacgctggtcgtgatcgacgtgaagcgtcgtggttcgcaagcgtcgaagacg
gtgcgtccgcaggtcaagctgctcgatgcgaacggcgaagaagtcaagatcccgaacacc
gagcactcggtgcagatcggcttccaggtcggcgctctgatcaccgtgaaggacggtcag
caagtgcaggtcggtgaagtgctcgcacgtatcccgaccgaatcgcagaagacgcgtgac
attaccggcggtctgccgcgtgtggcggaactgttcgaagcacgttcgccgaaggacgcg
ggtatcctggcggaagtcacgggtacgacgtcgttcggtaaggacacgaagggcaagcag
cgtctcgttatcacggacctcgagggcaaccagcacgagttcctgatcgcgaaggaaaag
caggttctggtgcacgatggtcaagtcgtcaacaagggcgaaatgatcgtcgacggtcct
gcggatccgcacgacatcctgcgtttgcagggcgtcgaggcgctgtcgcgttacatcgtg
gacgaagtgcaggacgtgtaccgtctgcaaggcgtgaagatcaacgacaagcacatcgaa
gtgattgttcgtcagatgctgcgccgcgtgcagattacggacaacggcgatacgcgtttc
atcccgggcgaacaggtcgagcggtcggacatgctcgacgagaacgaccgtatgatcgcg
gaagacaagcgtccggcaacgtacgaaaacgtgttgctcggtatcacgaaggcgtcgctg
tcgaccgattcgttcatctccgcggcgtcgttccaggaaacgactcgcgtgttgaccgaa
gcggcgatcatgggcaagcgcgacgacctgcgtggtctgaaggaaaacgtgatcgtcggc
cgtctgattccggccggtacgggtctcgcgttccacaaggcacgcaagagcaaggaactg
tccgaccgcgagcgtttcgatcagatcgcagcggaagagtcgttcgaattcggtacgccg
gaaaccccggccgccgaacagcagcactcaggcgagtaa
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