Paraburkholderia ginsengisoli: I6I06_16080
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Entry
I6I06_16080 CDS
T07246
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pgis
Paraburkholderia ginsengisoli
Pathway
pgis03030
DNA replication
pgis03430
Mismatch repair
pgis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6I06_16080
03430 Mismatch repair
I6I06_16080
03440 Homologous recombination
I6I06_16080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgis03032
]
I6I06_16080
03400 DNA repair and recombination proteins [BR:
pgis03400
]
I6I06_16080
Enzymes [BR:
pgis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
I6I06_16080
DNA replication proteins [BR:
pgis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
I6I06_16080
DNA repair and recombination proteins [BR:
pgis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
I6I06_16080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
Rv2179c-like
ATP-synt_DE_N
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
QQC63789
UniProt:
A0A7T4N263
LinkDB
All DBs
Position
1:3590291..3591442
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AA seq
383 aa
AA seq
DB search
MSEQFLSEPALDVPIVFVDLETTGGSTSEHRITEVGVVEVGAAGVSRWSSLVDPQQPIPS
FIQQLTGITNAMVHGAPTFDEIAPALLERLNGKLFVAHNASFDRGFLRGEFRRVGLAFDP
DVLCTVRLSRALFPAEKRHGLDALVERHALVPSDRHRALADADLIWQFWQRLHGLVPLDV
LRAQIERTTRRYRLAGDITEDLLDTAPAGCGVYAFYGEEDLPLYVGRSVRVRQRLRSHLT
GERRSSKDIRLAQQVRRVEWRATGGELGAMLAEAQWIATLRPGHNRVPRVTKSDPVDAPW
PFQGPVVFEEREEASQARAFHVVDRWRYVGHAPSLAQAAELYASSVAGPFELSTYRILQS
HLARGLRVMALSVSSNTPASSLV
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacagtttttgtctgaaccggccctagatgtgccgatcgttttcgtcgacctc
gaaaccaccggcggttccaccagtgagcaccgtattaccgaggtcggcgtcgtcgaagtg
ggggccgccggcgtgtcgcgctggagtagcctggtcgatccgcagcagcccattccatcg
ttcatccagcagctcaccggcatcacgaacgcgatggtgcacggcgcgccgaccttcgat
gagatcgcgccagctctgctcgaacgcctgaacggcaaattgttcgtcgcgcataacgcc
agtttcgatcgcggatttctgcgcggcgagtttcgccgggtagggctcgcgttcgacccc
gatgtgttgtgcacggtgcgtctgtcgcgtgcgttgtttccggccgaaaagcgtcacggg
ctggacgcgctcgtcgagcgtcacgcgctcgtgccgtccgaccgtcaccgtgcgctcgcc
gatgccgatctcatctggcaattctggcagcgtctgcacggcctcgtgccgctggacgtg
ctgcgcgcgcagatcgagcgcaccacgcgacgctaccggcttgccggcgatatcacggaa
gatctgctcgacacggcgccggccggttgtggtgtgtatgcgttctatggagaggaagac
ttgccgctgtatgtcggccgaagtgtgcgtgtgcgtcagcggttgcgctcgcatctgaca
ggcgagcggcgttcgtcgaaggacattcggctcgcgcagcaagtgcggcgcgtcgagtgg
cgcgcgacgggcggcgaattgggcgcgatgctcgcagaggcgcaatggatcgcgacgctg
cgtcccggccacaatcgcgtgccgcgcgtcaccaaaagcgatccggtcgacgcgccctgg
ccgttccaggggccggtcgtcttcgaggagcgcgaggaggcatcgcaggcgcgcgctttt
catgtcgttgaccgctggcgctacgtggggcatgcgccgtcgcttgcgcaggcggccgag
ttgtatgcgtcgagcgttgccgggccattcgagttgtcgacgtatcgcatccttcaaagc
catcttgcacgcggtctgcgtgtgatggcattgagcgtatcaagcaacacgccggcgtcg
agtctcgtttga
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