Paraburkholderia ginsengisoli: I6I06_18105
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Entry
I6I06_18105 CDS
T07246
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pgis
Paraburkholderia ginsengisoli
Pathway
pgis02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pgis00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
I6I06_18105 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgis03021
]
I6I06_18105 (rpoD)
Transcription machinery [BR:
pgis03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
I6I06_18105 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GTP_EFTU
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QQC66906
UniProt:
A0A7T4N7Y4
LinkDB
All DBs
Position
2:complement(294952..296946)
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AA seq
664 aa
AA seq
DB search
MNPFDREDSQHETAAYSGKTPSGRTAKGKGAGKAIPVAAELPPQQAEERQRQMRALIQLG
KEQGYLTHAQINDHLPDNFAQTAAIDSIVSAFSDMGVQVYEQAPDAETLLLNSNAPAVVS
DDQADEETEVALSTVDSEFGRTTDPVRMYMREMGATELLTRAGEIAIAKRIEDGLHEMVQ
AIAACPLAISAILASAQQVADGELRIDELVDGLNEETVAAEEEASTDAVADVDTDSEEDD
DSDSDDDVGPADSSAADEARLKQLTSDCLEIFAQVGMLSDQMNASHTRGDVTSKAYLRAR
EEIQQHLAKIRFTARTIDRLCGDVQHQVAQVRAIERNILQIVVSKSGMPREKFIESFAGH
EADLGWTERAARGNTSYGAALERHLPAIQSEQQKLIEIEATVSLPLKHLKEVNRKMVAAE
SKMRKAKSEMIEANLRLVISIAKKYVNRGMLFLDLIQEGNIGLMKAVDKFEYRRGWKFST
YATWWVRQAVTRSLADQARTIRVPVHMIETINKLNRISREILQQTGQEAHPSVLAERMEL
SEEKVRGILKIAKQPVSMETPVGDDGDATLGDMIEDSAASSPADAAMQADLRAAIDDALD
SLSPREAKVLRMRYGINTKSDHTLEEVGKQFDVTRERIRQIESKAMRKLMHPSRADRLKS
FLDR
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccttttgatcgcgaagattcgcaacacgaaaccgccgcctacagcggcaaaacc
ccgtccggccgcacggccaagggcaagggcgccggcaaagcgatccccgttgcggccgaa
ttgccgccgcagcaagccgaagaacgtcagcgccagatgcgcgcgctgatccagctgggc
aaggagcaaggctacctcacccacgcccagatcaacgaccacctgcccgacaacttcgcg
caaacggcggccatcgacagcatcgtcagcgcgttcagcgacatgggcgtgcaggtctac
gagcaagcccccgacgcggaaacgctgctgctcaactcgaacgcccccgccgtggtgtcg
gacgatcaggcggatgaggaaaccgaagtcgcactgtcgaccgtcgattccgaattcggc
cgcacgaccgacccggtgcgtatgtatatgcgcgaaatgggcgcaaccgagctgctgacg
cgcgcgggcgaaatcgcgattgcgaagcgcatcgaagacggcctccacgagatggtgcag
gcgattgccgcctgcccgctggcgatctccgcgattctggccagcgcccagcaggtcgcc
gacggcgaactgcgcatcgacgaactggtcgacggtctgaatgaagagacggtcgcggcg
gaagaagaagccagcacggacgcggttgcagacgtcgacacggactccgaagaagacgac
gacagcgatagcgacgatgacgtcggcccggccgactcgtcggcggctgacgaagcgcgc
ctgaagcaactcacgagcgactgcctcgaaatcttcgcgcaggtcggcatgctgtccgac
cagatgaacgcgtcgcacacgcgcggcgacgtcacgtcgaaagcgtatctgcgcgcacgc
gaagaaatccagcagcacctcgcgaagatccgcttcaccgcccgcacgatcgaccgcctg
tgcggcgacgtccagcaccaggtcgcgcaagtgcgcgcgatcgagcgcaatattctgcaa
atcgtcgtctcgaagagcggcatgccgcgcgagaagttcattgagtcgtttgccggccac
gaagccgacctcggctggacggagcgcgcagcgcgcggcaacacgtcgtacggtgcggcg
ctcgaacgccatctgccggcgattcagtccgaacagcagaagctgatcgaaatcgaagcc
acggtttcgctgccgctgaagcatctgaaagaggtcaaccgcaagatggtcgcggccgag
tcgaagatgcgcaaggccaagagcgaaatgatcgaggcgaatctgcgtctcgtgatctcg
atcgcgaagaagtacgtgaaccgcggcatgctgttcctcgacctgatccaggaaggcaac
atcggcttgatgaaggccgtggacaagttcgaataccggcgcggctggaagttttcgacg
tatgcaacgtggtgggtccgccaggccgtcacgcgttcgctcgccgaccaggctcgcacg
atccgcgtgccggtgcacatgatcgaaacgatcaacaagctcaaccgcatttcgcgcgag
atcttgcagcagaccggtcaggaagcgcatccgtcggtgctcgccgaacgcatggagttg
tcggaagagaaggtgcgcggcatcctgaagattgccaagcagccggtgtcgatggaaacc
ccggtcggcgacgacggcgacgccaccctcggcgacatgatcgaagactcggcggcttcg
tcgccggccgatgcagcgatgcaagccgacttgcgcgccgccatcgacgacgcgctcgat
tcgctgtcgccgcgcgaagcgaaggtgctgcgtatgcgctacggcatcaacacgaagtcg
gaccatacgctcgaagaagtcggcaagcagttcgatgtcacgcgcgagcggattcgtcag
atcgaaagcaaggccatgcgcaagctgatgcacccgagccgcgccgaccgactgaagtcg
ttcctcgaccgctaa
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integrated database retrieval system
