Paraburkholderia ginsengisoli: I6I06_23845
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Entry
I6I06_23845 CDS
T07246
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pgis
Paraburkholderia ginsengisoli
Brite
KEGG Orthology (KO) [BR:
pgis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgis03032
]
I6I06_23845
03400 DNA repair and recombination proteins [BR:
pgis03400
]
I6I06_23845
Enzymes [BR:
pgis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
I6I06_23845
DNA replication proteins [BR:
pgis03032
]
Prokaryotic type
DNA Topoisomerases
I6I06_23845
DNA repair and recombination proteins [BR:
pgis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
I6I06_23845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
FumaraseC_C
Motif
Other DBs
NCBI-ProteinID:
QQC65836
UniProt:
A0A7T4N5V8
LinkDB
All DBs
Position
2:1616648..1617985
Genome browser
AA seq
445 aa
AA seq
DB search
MAATTQPSARRAESAQPANPADDSAKPSAPAAMPPGLRHADDTKPGYTRKRDKDGFVYFD
ASGKRIDDQDDIQRINALAIPPAYEDVWICPDPRGHIQATGRDARGRKQYRYHPRWRETR
DADKYERMAEFGRALPRIRARVARDLKLPGMPCDKVIAAIVQLLDTTLIRIGSVEYARDN
QSYGLTTLRKKHVKIEAGQVRFRFRGKSGIEHDVTVDNPRIMRIVRRCAELPGHDLFQYL
DDDGTRRTVGSADINDYLRRASDADFTAKDYRTWAGSVYALAALRRLMCSSAAEARRHLV
ATVKDVATLLRNTPAVCRRCYIHPTVISAFEADELQSLPPGQSRRGLRVDEVAFAALLAH
AEKRAAKLARQAGAKGRKVRESAVAESIDGSLTSLLKKSRVGRNAAAAEKAGAKANAKRA
RSARRTAGMSAVDAASDVKRAAHRA
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggccgccacgacccaaccgagcgcacgccgtgccgaatccgcgcaacctgcgaatccc
gcggacgattccgcgaagccatcggcgcccgctgcgatgccgccaggtctgcggcacgcc
gacgacaccaagccgggctacacacgcaagcgcgacaaggacggcttcgtctatttcgat
gcgagcggcaagcgcatcgacgatcaggacgacattcagcgcatcaatgcgctagccatt
ccgcccgcgtacgaagacgtgtggatctgccccgatccgcgcggccacatccaggcgacc
ggccgcgacgcacgcggtcgcaagcagtaccgctatcacccgcgctggcgcgagacgcgc
gacgccgacaaatacgagcgcatggccgagttcggccgcgcgctgccacgcattcgcgca
cgcgtcgcccgtgacctcaagctgccgggcatgccgtgcgataaggtgatcgcggcgatc
gtgcagttgctcgacacgacgctgatccgtatcggcagtgtcgaatatgcgcgcgataat
cagtcgtacggattgacgacgctgcgcaagaagcatgtgaagatcgaagccggacaggtg
cgcttccggtttcgcggcaagagcggtatcgaacacgacgtcacggtcgacaatccgcgc
atcatgcgcatcgtgcgtcgctgcgccgaactgccgggccacgatctgttccagtatctc
gacgatgacggcacgcgccgcaccgtcggctcggccgacatcaacgactatctgcgtcgt
gcgagcgacgcggacttcaccgcgaaagactatcggacgtgggccgggagcgtgtacgcg
ctcgcggcgctgcggcggctgatgtgcagcagcgcagcggaagcgcgccgccatctcgtc
gccacggtgaaggacgtcgcgacgctgctgcgcaatacgccggcggtgtgccggcgttgc
tacattcatccgacggtgatcagcgcgttcgaggcggatgaattgcaaagtttgccgccg
ggtcagtcacgtcgcgggctcagagtggatgaagtggcgttcgccgcgctgctcgctcac
gcggaaaagcgcgccgcgaaactggcgcgtcaggcgggggcgaagggccgcaaggtacgt
gagtcggcggtggcggagagtatcgacggctcgctcaccagcttgctgaaaaagtcgcgc
gtggggcgcaatgcggcggccgccgagaaagccggcgcaaaagcgaatgccaaacgggca
cgctccgcgcgacggactgccggtatgagcgccgtcgatgccgcgagtgatgtgaagcgg
gccgctcatcgagcgtga
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