Pedobacter gandavensis: QG516_01050
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Entry
QG516_01050 CDS
T09013
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pgj
Pedobacter gandavensis
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgj03032
]
QG516_01050 (topA)
03400 DNA repair and recombination proteins [BR:
pgj03400
]
QG516_01050 (topA)
Enzymes [BR:
pgj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
QG516_01050 (topA)
DNA replication proteins [BR:
pgj03032
]
Prokaryotic type
DNA Topoisomerases
QG516_01050 (topA)
DNA repair and recombination proteins [BR:
pgj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
QG516_01050 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
FGase
Motif
Other DBs
NCBI-ProteinID:
WGQ10238
LinkDB
All DBs
Position
263299..265881
Genome browser
AA seq
860 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFLVKSSYGHIRDLVKGDMGIDVANNFAQTYEVPADK
KHVVAELKKLAKEAEMVWLASDEDREGEAISWHLYETLGLKENKTKRIVFHEITKPAILK
AIENPRTIDYNLVNAQQARRVLDRLVGFELSPVLWKKIKPSLSAGRVQSVAVRLIVDRER
EVNKFNATAAFKVSAQFSTGKGKEVVKAELPQRFEKEADAEKFLNDCIQAGFSVASLETR
PAKRNPAPPFTTSTLQQEASRKLGYSVSRTMQIAQRLYESGRITYMRTDSVNLSETALQA
AAAEINSAWGEKYHHQRTYKTKSAGAQEAHEAIRPTYFNHHTVTGDSSEQRLYELIWKRA
IASQMSEAQFEKTTAQIAISTRKEHLVAEGEVLKFDGFLKVYLESSDDDEAEDSEDNNML
PPLAKGQELSLREMNATERFSRPPARYTEASMIKKLEELGIGRPSTYAPTISTIQNRGYV
VKEDRDGRQRSFTSIVLANGEVKKQIKTEITGAEKSKLFPTDIGEVVNDFLVEHFKGIVD
FNFTANVEKEFDEIAQGLQEWTKMLHSFYTPFHQEVETTLENAERANGERLLGVDPTSGK
NVYAKVGKFGPLVQIGQNDDEEKPRYASLAKSQSVATVTLEDALEQFKLPFQLEDYEGKE
VSVGVGRFGPYVKWGDAYISIPKNEEPLSVDRDRAIEIIQEKITADAPVAHYEGLPVTKG
KGRFGPFIKWNDLFINVPKAYNFEELSAADINELIGKKVEKEANRFIQQWNEEKIAIENG
RWGPFIRFGKDMLKLGKNPATGEKYTPEDLASVSLEEVKKLIVEQVPNAFEPKATKKKAA
AKTTAKAAKAPAKKKTVAKK
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaatttattaatagttgagtcacctgcaaaagctaaaaccatcgaagggtat
ttaggaaaagatttccttgttaaatcaagttacggacacatccgggatttggttaagggg
gatatgggcatcgatgtagccaataatttcgctcagacctatgaggtccctgccgataaa
aagcatgtagtagccgaacttaagaagttagccaaggaagccgaaatggtatggctagcg
tccgatgaggaccgtgaaggggaagcaatttcctggcacttatatgagacattaggacta
aaagaaaataaaaccaaacggattgtatttcacgagatcactaagcctgcaatattaaag
gcgatagaaaatccgcgtaccatcgattataacctggtcaatgcccagcaggcacgccgt
gtattggatagattggtaggttttgaactttctccggtattatggaaaaaaatcaaaccc
tctttatctgcaggtagagtacagtcggtggccgtacgtttaattgtagacagagagcga
gaagtcaataaatttaatgcaaccgctgcatttaaggtatctgcacaattcagcaccgga
aaaggtaaagaagtggtgaaagcagaattgccacagcgttttgaaaaagaggcagatgcg
gagaaattcttaaacgactgtatccaggcaggattcagcgtagccagtttagaaaccaga
cctgcaaaaagaaacccagcgcctccatttacaacttcgactttacagcaggaagcttcc
cgaaaactgggatattccgtgtcaaggacgatgcagatcgctcagcgactgtatgaaagt
ggacgtatcacctatatgcgtaccgattccgtgaatttatcggagactgcattacaggca
gcggcagcggaaattaattctgcatggggcgagaaataccaccaccaaagaacttataaa
acgaaatctgcaggcgcacaggaagctcacgaggccatccgccctacttatttcaatcac
cataccgttaccggcgacagttcagaacagcgtttgtatgaattgatctggaagcgcgcc
atcgcttctcagatgtctgaagcacagtttgaaaaaacaacggcacagattgccatcagt
acccgcaaagagcatttagttgcagaaggtgaagtattgaaatttgatggtttcctaaaa
gtatacctggaatccagcgatgacgatgaagcagaagattcggaagacaacaacatgctc
cctccattggctaaaggccaggaattgagcttaagagaaatgaatgcaacagagcgtttc
tctcgtccaccggcaagatatacggaggccagcatgatcaagaaactggaagaactgggt
atcggtcgtccctctacgtatgcaccaacgatttctacgattcaaaatcgtggttacgtg
gtaaaagaagaccgtgatggtcgtcagcgttcctttacctccattgtattggcaaatggc
gaagtcaaaaaacaaattaaaacagaaattaccggtgcagagaaatcaaaactcttccca
acagatataggtgaagtagtcaacgacttcctcgtagaacactttaaaggcattgtcgat
ttcaactttacagccaatgtagagaaggaatttgatgagatcgctcaaggtttacaggaa
tggacgaagatgctccactccttctacacccctttccatcaggaggtagaaactactttg
gaaaacgcagaacgtgcaaacggagaacgtttactaggtgtggatcctacttcaggaaag
aacgtatatgctaaagtgggtaagtttggtccattggtgcaaatcggtcagaacgacgat
gaagagaaaccgcgttacgcaagtttggcaaaatctcagtcggtggccacagtgacgctt
gaggatgctttagagcagtttaaactgcctttccaattggaagactatgaagggaaagaa
gtttctgtaggtgtaggccgctttggaccttacgtgaaatggggagatgcttacatctct
attcctaaaaatgaagagcctttatcagtagacagagaccgtgcgatagaaattattcag
gagaaaattactgctgatgcccctgttgctcattatgaaggtttaccggtcactaaaggt
aaaggccgtttcggtcctttcatcaaatggaacgacttgttcatcaacgtaccaaaagcc
tataactttgaagaactttcggctgcagatatcaatgaattaattggtaaaaaagttgag
aaagaagccaacagattcatccagcagtggaatgaggagaaaattgcgattgaaaacggc
agatggggacctttcatccgtttcggaaaagacatgctgaaattgggtaaaaacccggct
acaggtgaaaaatatacacctgaagatctggcatccgtttctttggaagaagtgaaaaaa
ctaatcgttgagcaggtaccaaatgcgtttgagcctaaagcaactaagaaaaaagcagca
gctaaaaccactgctaaagcggcaaaagcaccagcaaaaaagaaaacagtagcaaaaaaa
taa
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