Pedobacter gandavensis: QG516_03990
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Entry
QG516_03990 CDS
T09013
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj00550
Peptidoglycan biosynthesis
pgj01100
Metabolic pathways
pgj01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
QG516_03990 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
QG516_03990 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pgj01011
]
QG516_03990 (mrdA)
Enzymes [BR:
pgj01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
QG516_03990 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
pgj01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
QG516_03990 (mrdA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
MccV
Motif
Other DBs
NCBI-ProteinID:
WGQ10814
LinkDB
All DBs
Position
complement(945198..947021)
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AA seq
607 aa
AA seq
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MNKYSRKSVIQGVMVVCILVIFFRLVFMQVIDDSYYKAATENVLRKMVLYPNRGNIRYRG
GQIMVRNKPVYDIMVIPSKIKNIDTAKFCRLLNINFEQFEHQVNKAKKFSPYKASIFKKE
ITLEAYSILQEQLNQFSGFLAERRTIRVYPDSVAAQFLGYVNQVTERDIHYDDRFYRPGD
FIGVSGVERFYEQQLRGKRGVKNVMVDAFNRPKGEFKDGEHDTVSTAGQDLVSSLDQGIQ
KLAEKFMNNKIGSIVAIEPSTGEVLAFVSSPSYDPNLMSGLEKGNNYMELLNNSNHPLFI
RPIQAQYPPGSVFKVVSALVAQQAGLINEHTVFNCQGGYRYGKKGFMGCTHVHGPINLSQ
SIQTSCNTYFGYIYSGMIDNQGSGAVDAYDKWRSSIMKFGIGKALGIDLQNEKPGSLPSS
AFYTKRFGSHNWTSSYNMSLSIGQGEMGITTMQMANIMAIVANRGFYYRPHLIKGIGTQD
LNNTKFKERLSVDVNSEYFEPVIQGMSLAVNNPGGTAYSARINGIEMCGKTGTVQNSHGK
NHAAFLAFAPRKNPKIAIAVFVENAGYGSVWAAPIGSMIVEKYLRDSISIQASIQSRIIN
GNLLPDS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatattccagaaaatccgtaattcagggggttatggtggtttgtatacttgtt
attttttttaggttggtctttatgcaggtcatcgatgattcttactataaagcggcaaca
gaaaatgttttacgtaaaatggttctttatcccaatagaggtaatataaggtatagaggg
ggacaaattatggttaggaataaacctgtttacgatattatggttattccctctaaaata
aaaaatattgacactgctaagttctgtcgtttgttaaatattaatttcgagcaatttgaa
caccaggtgaataaggcaaagaaattttctccttataaagcctcaatttttaaaaaggag
atcacattagaagcttatagtattttacaagaacaactcaatcagtttagtgggtttttg
gccgaaagacggacaattcgtgtttatcctgatagcgttgcagctcaatttttgggatat
gtaaaccaggttactgaacgggatattcattacgatgatcgtttttatcgtcctggcgat
tttataggtgtgagcggggtagagcgtttttatgaacaacagcttaggggaaaacgtggg
gttaaaaatgtaatggtagatgcatttaatcgacccaaaggtgaatttaaagacggtgaa
catgatactgtttcaacggctggacaggatttggtttcttcccttgaccaaggaattcaa
aaactcgcagagaaattcatgaataataaaatcggcagcatagtggctattgaacccagt
actggtgaagttttagcttttgtaagcagcccgtcttatgacccgaacttaatgtcagga
ctggaaaaaggaaataattatatggagttattgaataattccaatcaccctttattcatt
agacctatccaggcgcagtatcctccgggttcagtgtttaaagtggtgagtgctttggtg
gcacaacaagccggtttaatcaatgaacatacagtttttaattgccaggggggatatcgt
tatggtaaaaaggggtttatggggtgtactcatgtgcatggaccaataaatctttctcaa
tctattcaaacttcttgcaatacctatttcggttatatttattctggaatgattgacaat
caaggtagtggtgctgtggatgcttatgataaatggagatcttctattatgaaatttggt
ataggtaaggcgctggggatagatctgcaaaatgaaaaaccaggttcgttaccttcttca
gctttctatactaaacgattcggaagccataactggacttcgtcatacaatatgtctctt
tcaattggacaaggagagatgggaataaccactatgcaaatggctaatatcatggctatt
gttgccaacagaggattttattacagacctcatttgataaagggcatcggtacacaagat
ttgaataatactaaatttaaggagcgactttcagttgatgtcaattctgagtacttcgag
cctgtcatccaagggatgagccttgccgttaataatcctggtggtactgcctactcagca
cgaattaatggcattgaaatgtgtgggaagacaggaacggttcaaaattcacatgggaaa
aatcatgctgcatttttggcttttgccccaagaaagaatcccaaaattgcaattgcagtg
tttgtagaaaatgccggatatggaagtgtttgggctgcccctattggaagtatgatcgtg
gagaaatatttaagggatagtatatctattcaagcctctattcagtcaaggattataaat
ggtaatttgttgcctgattcttaa
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