Pedobacter gandavensis: QG516_04465
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Entry
QG516_04465 CDS
T09013
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pgj
Pedobacter gandavensis
Pathway
pgj02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
QG516_04465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgj03021
]
QG516_04465
Transcription machinery [BR:
pgj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QG516_04465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
Sigma70_ECF
GerE
HTH_24
HTH_40
HTH_20
RE_HindIII
HTH_38
Motif
Other DBs
NCBI-ProteinID:
WGQ10907
LinkDB
All DBs
Position
complement(1062513..1063112)
Genome browser
AA seq
199 aa
AA seq
DB search
MKELSELSDHQLLKSCRNGNDKAFDLLFQRYFKPLYSLSLKYVRDPEVAEELTMDLMLWV
WEKRNLDFCPDGNLKAYLFRAIRNSVISFFRKKTLATQPLEDYHEETMPDSRHADHNQIY
TEIEACFQEKLNELSPQRRKVYEMSREEELTYPQIANQLNLSANTVKSHMSYSLNHLRKS
LLEYLDVSSVIALFCWFIK
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattaagtgaattatcagaccatcagttgttgaaatcttgtcgcaatggaaat
gataaagcatttgatctcctctttcagcgatatttcaaaccactctactcgctctcttta
aagtatgtgcgtgatccggaagtggccgaagaattgacaatggacctgatgctatgggta
tgggaaaaaagaaacctcgacttttgtcccgacggaaacctgaaagcgtatttatttagg
gcgatacgcaacagcgtgatcagcttcttccgcaaaaagactttagctacccagccactg
gaagattaccatgaagaaaccatgccggattccagacatgcggatcacaaccagatctat
acagaaattgaagcctgcttccaggaaaaactgaatgagctgagtccacagcgtcgcaaa
gtctatgaaatgagcagggaggaagagctgacctacccgcagatcgcaaatcaattgaac
ctttctgcaaacacagtgaaaagtcacatgagctattctttgaatcacctgcgtaaaagt
ttacttgaatacctggatgtcagctctgtaattgcgcttttctgctggttcataaaataa
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integrated database retrieval system
