Pedobacter gandavensis: QG516_05105
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Entry
QG516_05105 CDS
T09013
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QG516_05105 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pgj03019
]
QG516_05105 (recQ)
03400 DNA repair and recombination proteins [BR:
pgj03400
]
QG516_05105 (recQ)
Enzymes [BR:
pgj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QG516_05105 (recQ)
Messenger RNA biogenesis [BR:
pgj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QG516_05105 (recQ)
DNA repair and recombination proteins [BR:
pgj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
QG516_05105 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
WGQ11032
LinkDB
All DBs
Position
complement(1204048..1206237)
Genome browser
AA seq
729 aa
AA seq
DB search
MDVKKSLFDNLQTFFGFDNFKGDQESIITNVLEGKNTFVIMPTGGGKSICYQLPALMSEG
TAIVISPLIALMKNQVDQLRAFGGSDSIAHFLNSSLNKAEITQVKSDLLSGQTKLLYVAP
ESLSKPDNIEFLKLIKISFVAVDEAHCISEWGHDFRPEYRKIRQVISGLGEDIPIIALTA
TATPKVQQDIIKNLQMSDATLFKSSFNRPNLFYEIRPKRDVIKEMIRYIKYNTGKSGIIY
CLSRKKVEEVAEALNLNGIKALPYHAGLEPKVRADTQDKFLMEDVEVIVATIAFGMGIDK
PDVRFVIHHDIPKSMEGYYQETGRAGRDGGEGVCIAFYAQKDVDKLAKFMKDKPVSEREI
GTQILKEVIDYAESGVCRRKQILHYFGENFNETGCNCMCDNCKKPKKLFEAEDNLLVLLK
LIQRIGEKFDDAHILNIFTGSETAQTIAYEHGKIPEFGLGMVEGENYWKSLIRQSVLNNF
LSKDIDNYGLLRLTNNGRDFIENPYSLKFVLNEPIESAADDDEDDVKHGSGTLDTQLLQL
LKDLRKKIAKQKNVPPFVVFQDPSLEEMCTHYPIAMDELKQISGVGNGKAMKFGSPFIEL
IKKYVEDNDIERPIDLIIKTQANKSQLKVSIIQNVDRQISLEDIAKSKGITYFDILKEIE
AIVNSGTKLNLNYFVDELIDEDRQDEVFDYFQSAENDSIDEALKELGEADYSREEIQLMR
IKFMSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgaaaaagtcgttgtttgataacttgcaaaccttttttggttttgataatttt
aaaggtgaccaggagtctatcatcaccaatgttctcgaaggaaagaatacgtttgtgatt
atgcctacaggtggagggaagtccatatgttaccagttacctgcgctaatgagcgaagga
actgcaattgttatatcgcccctgattgccctgatgaaaaatcaggtagatcagctgagg
gcatttggtggaagcgacagcattgcacactttttaaactcttctttaaataaagcagaa
attacccaggtaaaaagtgatctgctcagtggacaaaccaaattgctgtacgttgccccg
gaatcattgtctaaaccagacaatattgaattcttaaagctcatcaagatttcttttgta
gctgtggatgaagcccactgtatttcggaatgggggcacgattttcgtcccgaataccgg
aaaatcagacaggtgatcagcggactgggagaggatatcccaattatcgctttaacggct
acagcaaccccaaaagtacagcaggatatcattaagaatttacagatgtctgatgctacc
ttgtttaaatcttcttttaacaggccgaacttgttttatgagatccgcccgaaaagagat
gtcatcaaggaaatgatcaggtacatcaagtacaataccggaaaatctggaatcatttac
tgcctcagccgtaaaaaggtggaagaggtcgcggaagcgcttaacctgaatggcattaag
gccctgccttatcatgccggtctggagcctaaagtacgtgcagatacacaggataaattc
ctgatggaagatgtagaggtgattgttgccaccatcgcttttgggatgggaatcgacaaa
cctgatgtacgtttcgtaatccaccatgatattcctaagagtatggaaggttattaccag
gaaactggtagagccggaagagacggaggagaaggggtatgtattgctttttatgcacag
aaagacgtagataaactggcgaaattcatgaaggataagccggtgtctgaacgtgaaatc
ggaacacagatcctgaaggaagtgatcgattatgccgaatcaggcgtttgccgtagaaaa
cagatcctgcattattttggtgaaaacttcaatgaaacaggctgtaactgtatgtgcgac
aactgtaaaaagcctaagaaactttttgaagcagaagataacctgttggttttattgaaa
ttaatccagcgtatcggcgagaaattcgacgatgcacatatcctgaacatctttaccgga
tcggaaaccgctcaaaccatcgcttacgagcatggcaagattcctgaattcggtttagga
atggtagaaggagaaaactattggaagtccttaatccgccagtcggtattgaacaacttc
ctttctaaagatattgacaattatggccttttaaggctaaccaataatggtagagacttt
atcgagaatccatacagccttaaatttgtactcaatgagccgatagaaagtgcggctgat
gatgatgaagatgatgtgaaacatggatccggaactttagatacccagctgctgcagctg
ttaaaggacctgagaaagaaaatcgccaagcaaaagaatgtaccaccattcgtcgtgttc
caggatccttcgctggaagaaatgtgtacgcattatccgattgcaatggatgagctgaaa
cagatctcaggagtaggaaatggaaaggccatgaagtttggttcgccattcattgaactg
attaaaaaatatgtggaggacaatgatattgaacgcccgatcgacctgatcattaaaact
caggctaataaatcgcagctgaaagtatcgattattcaaaatgtagacagacaaatcagt
ttagaagacattgctaaatctaaaggcatcacttacttcgacatcctaaaagagattgaa
gccattgtgaactccggaacaaagctgaacctgaattattttgtagatgaattgattgat
gaagaccgtcaggatgaagtattcgattacttccaatctgcggaaaatgactctattgat
gaagcactgaaagaactgggagaagccgattattcccgtgaagagattcaattgatgcgc
atcaagttcatgtctgaactaggtaattaa
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