Pedobacter gandavensis: QG516_07365
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Entry
QG516_07365 CDS
T09013
Symbol
kdsB
Name
(GenBank) 3-deoxy-manno-octulosonate cytidylyltransferase
KO
K00979
3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:
2.7.7.38
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj00541
Biosynthesis of various nucleotide sugars
pgj01100
Metabolic pathways
pgj01250
Biosynthesis of nucleotide sugars
Module
pgj_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
QG516_07365 (kdsB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
pgj01005
]
QG516_07365 (kdsB)
Enzymes [BR:
pgj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.38 3-deoxy-manno-octulosonate cytidylyltransferase
QG516_07365 (kdsB)
Lipopolysaccharide biosynthesis proteins [BR:
pgj01005
]
Lipid A
QG516_07365 (kdsB)
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Gene cluster
GFIT
Motif
Pfam:
CTP_transf_3
NTP_transf_3
Motif
Other DBs
NCBI-ProteinID:
WGQ11472
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Position
1777296..1778027
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AA seq
243 aa
AA seq
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MKVLGVIPARFASTRFPGKPLVDIQGKSMIRRVYEQAIKAKGLDKVVVATDDERIAEELK
SFGGEYIMTGTQHQSGTDRCAEVARQLPGFEVLINIQGDEPFIDPAQIDLLVSCFANPNV
QLATLIKEIHTETELFNHNLPKVVLNARKEAVYFSRQTIPYLRNAEKENWLQAHLFYKHI
GIYGYTATVLQEITALPPSSLEIAESLEQLRWIENGYAIQTRVTDIETIAIDTPDDLKKI
LGA
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtacttggagtaattccagcccgctttgcttctacgcgtttccccggaaagccc
ttagtggacattcaggggaaaagcatgatccgcagggtatatgagcaggcgattaaagcg
aaggggctcgacaaagtagtcgtggccacggatgatgaacgcatcgccgaagaactgaaa
agttttggtggcgagtacatcatgaccggcactcagcaccaaagcggcacagacagatgt
gcggaagtagccaggcaattacctggttttgaggtactcatcaacatacagggtgatgaa
ccttttatagatccggcacagatagacttattggtttcctgctttgcaaacccgaacgta
cagctggctaccctcatcaaggaaatccatacagaaacagaattatttaaccataatttg
ccaaaggtggtgttgaatgcccgcaaagaagcggtgtattttagtcgccagaccattcct
tacctgcgaaatgcagaaaaagaaaactggttgcaggcacatttgttttataaacatatt
ggcatttacggctacacagctactgtattacaggagattaccgcactccctccttcttcc
ctggaaattgcagaaagtttggaacagctgcgctggatagaaaatggctatgcgattcaa
accagggtaaccgacattgaaacgattgccattgacactcctgatgacctgaaaaagata
ttgggtgcttaa
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