Pedobacter gandavensis: QG516_07415
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Entry
QG516_07415 CDS
T09013
Name
(GenBank) exonuclease domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
pgj
Pedobacter gandavensis
Pathway
pgj03030
DNA replication
pgj03430
Mismatch repair
pgj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QG516_07415
03430 Mismatch repair
QG516_07415
03440 Homologous recombination
QG516_07415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pgj03032
]
QG516_07415
03400 DNA repair and recombination proteins [BR:
pgj03400
]
QG516_07415
Enzymes [BR:
pgj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QG516_07415
DNA replication proteins [BR:
pgj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QG516_07415
DNA repair and recombination proteins [BR:
pgj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QG516_07415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DEDDh_C
GIY_YIG_2
DUF7508
R2K_2
Motif
Other DBs
NCBI-ProteinID:
WGQ11482
LinkDB
All DBs
Position
1791818..1793188
Genome browser
AA seq
456 aa
AA seq
DB search
MLYAVVDIETTGGHAAGNGITEISILVHDGVSVVDSYETLINPGQYIPAHIEALTGISND
MVEDSPMFHEVAEQIYNLLKDKIFVAHNVNFDFSFIKHNLSVAGYDLQCKKLCTVRLSRK
IIPGHASYSLGKLCAALKISLNNRHRAGGDAAATAELLSLLLANDSEGIIPASLKIGSKE
QALPPNLPKSQIDRLPLCPGVYYFKDQKGKVIYIGKAKSLKKRVCSHFTGNSTAKQRQNF
LKDIYTVDFEVCGTELMAFILEATEIKRLWPENNRAMKRYEQKYALYAFEDQKGYLRLGL
DTFKKNMPVLYSFNTILEGHHVLKILIKDHFLCEKLCYIQSKRLACTGHEEGNCSGACLG
KESAPAYNVRVKYAIEQLKTMLPSFAILDTGRTEDEQSCILVEQGKLYGMGYISPYTDVN
EPGMLKSALQPFPSNDYIMHLILNHTELYPQKRISI
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgctgtacgctgttgtagatatagaaaccactggcggtcatgctgcaggaaatggaatt
acggaaatttcaatcctggtgcatgacggcgtttctgtggtagattcgtatgaaacactg
atcaatcctggacaatatattccagctcatattgaagccttaaccggcattagtaatgat
atggttgaagattctccgatgtttcatgaagtagctgagcagatttataacctgctgaag
gataaaatatttgtggcccacaatgtgaattttgacttttcttttatcaagcacaacctc
tctgttgctggttatgacctgcaatgcaaaaaattatgtacggtaagattgagtcgtaaa
atcatccctggacatgcctcttatagccttggaaaattgtgtgctgcattaaagatttcc
ctgaataaccgccacagggctggtggcgatgccgcagccacggcagaattattaagtctt
ttactggccaatgactcggaaggaattatcccggcctccttaaaaatcggttctaaagaa
caggcactccctcctaacctacctaaatcccagatagatcgacttcctttatgtcctggg
gtttattactttaaagatcaaaaaggaaaagtaatttatatcgggaaagctaaaagcctg
aagaaaagagtgtgttcccatttcacgggaaacagcacagcaaagcaacgtcagaacttt
ctaaaagacatctacaccgtagattttgaggtttgcggaacagaactgatggcctttatc
ctggaagcaacagagatcaaaagactatggccggaaaacaaccgtgccatgaaacgctat
gagcagaaatatgcactctacgcttttgaagatcaaaaaggatacctgaggttagggctg
gatactttcaagaaaaacatgccggttttgtatagcttcaataccattttggaaggacat
catgtactgaaaattctcatcaaagatcattttctatgtgagaagctctgctatatccaa
agcaaaagactggcctgtacaggtcatgaagaaggaaattgcagtggtgcctgcctgggc
aaagaatcagcaccagcttataatgtgcgtgtaaaatatgcaatagaacagttgaaaacc
atgctgccgagctttgcaattttagacaccggaagaacagaagatgaacaaagctgcatc
ctcgtggaacaaggaaaattatacggcatgggttatatttctccgtataccgatgtaaat
gagcctggaatgctaaaatcagctttgcagcctttcccttccaatgattacattatgcac
ctgattctaaaccatacagaactgtatccgcagaagaggatttcaatataa
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