Pedobacter gandavensis: QG516_08630
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Entry
QG516_08630 CDS
T09013
Name
(GenBank) RNA polymerase sigma factor RpoD/SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
pgj
Pedobacter gandavensis
Pathway
pgj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pgj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QG516_08630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pgj03021
]
QG516_08630
Transcription machinery [BR:
pgj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QG516_08630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
UPF0122
NPV_P10
PgaD
HTH_28
Motif
Other DBs
NCBI-ProteinID:
WGQ11714
LinkDB
All DBs
Position
2102549..2103409
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AA seq
286 aa
AA seq
DB search
MRQLKITQSITNRESQSLDKYLHEIGKVDLITAEEEVILARKIREGDQAALERLTKTNLR
FVVSVAKQYQNQGLTLGDLINEGNLGLIKAAKRFDETKGFKFISYAVWWIRQSILQAIAE
QSRIVRLPLNQVGSLSKISKAFSKLEQEFEREPSPEELADILETTVDKISDTLSNSGRHV
SMDAPFVQGEENTLLDVLENHEPNTDSSLINESLSEEIKRSLSTLTEREREIIVLFFGLS
TNHPLSLEEIGEKFNLTRERVRQIKDKALQRLRHTSRSKILKSYLG
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgagacaactcaaaatcacgcaatccattaccaatcgcgaaagtcaatctttagacaaa
taccttcacgaaattggtaaagtagatttaatcaccgccgaagaagaagtaatattagca
agaaaaatacgcgagggagatcaggccgcattagagcgtttaaccaaaacgaatttacgt
tttgtggtttcagtagcgaagcaatatcaaaatcaaggtttaactctaggagacttaatc
aacgaaggaaacctgggtttaattaaggctgcaaaacgttttgacgagactaagggtttc
aaatttatctcttatgctgtttggtggattcgtcaatctatattgcaggctattgctgaa
caaagtcgtattgttcgtttgccattaaaccaggtgggttcattgagcaaaatcagcaag
gctttctctaaattagagcaggaatttgaacgtgagccttctccggaagaattggcagat
atcttagaaactacagtagataaaatctctgatactttaagtaactctggccgtcacgta
tcaatggatgcgccatttgttcagggagaagaaaatacattgttagatgtattggaaaat
catgagccaaatacggatagcagtttgatcaatgaatctctttctgaggaaatcaaacgt
tctctttcaactttaactgagcgtgagcgcgagattattgtacttttcttcggattgagc
acaaaccatcccctatctttagaagagatcggtgagaagtttaacctcacccgtgagcgt
gtacgtcagattaaagacaaagcgttacagcgtttgcgtcatacttcaagaagtaaaatc
ttaaaatcatatttgggctag
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